https://github.com/alexstormwood/feb24-t3w3-js-dom-intro
Super cool list of things
https://github.com/alexstormwood/javascriptdemoaug2024
Demo of how JavaScript enhances websites.
https://github.com/alexstormwood/work-lists
Lists of workshops, projects, etc, that I've worked on.
https://github.com/alexteghipco/ctperfusionpipeline
A pipeline for processing CT perfusion images output by RAPID (i.e., conversion to scalar, co-registration, normalization)
https://github.com/alisaei/ribbon
A genome browser that shows long reads and complex variants better
https://github.com/alisaei/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
https://github.com/alisaei/racon
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116
https://github.com/alisaei/pb-assembly
PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
https://github.com/alisaei/intervene-shiny
An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps
https://github.com/alisaei/hic_tools
A collection of tools for Hi-C data analysis
https://github.com/alisaei/hictool
Python library for processing and visualizing Hi-C data
https://github.com/alisaei/ggsashimi
Command-line tool for the visualization of splicing events across multiple samples