https://github.com/cellgeni/watergate • Science 26%

Wiretaps for things

https://github.com/cellgeni/nf-scsajr • Science 26%

single cell alternative splicing

https://github.com/cellgeni/nf-scautoqc • Science 39%

Nextflow implementation of scAutoQC pipeline

https://github.com/cellgeni/nf-processed2irods • Science 26%

Pipeline to move processed datasets to irods

https://github.com/cellgeni/farm-course • Science 26%

Materials for farm-course organised by cellgenIT

https://github.com/cellgeni/visutils • Science 26%

set of function for qc and visualization of Visium data

https://github.com/cellgeni/reprocess_public_10x • Science 26%

Scripts to help get fastqs

https://github.com/cellgeni/nf-metacells • Science 26%

https://github.com/cellgeni/snippets • Science 13%

A repository for cellular genetics informatics scientists to upload their notebooks to

https://github.com/cellgeni/c2l • Science 13%

Set of scripts to run cell2location on farm

https://github.com/cellgeni/schard-py • Science 13%

https://github.com/cellgeni/visium_vistools • Science 13%

visualisation tools for Visium outputs

https://github.com/cellgeni/jupyter-images • Science 13%

Cellular Genetics Informatics Docker Images for Jupyter

https://github.com/cellgeni/gbm-stuff • Science 13%

Storing the scripts for use in the GBM project

https://github.com/cellgeni/schard • Science 13%

reticulate-free single cell format conversion

https://github.com/cellgeni/multiome-pipeline • Science 13%

https://github.com/cellgeni/snp_tools • Science 13%

storage for the tools for SNP projects we use

https://github.com/cellgeni/celltypist_census • Science 13%

This repo includes the notebooks to test CellTypist by using the datasets downloaded from CELLxGENE portal by using Census.

https://github.com/cellgeni/cellxgene • Science 10%

An interactive explorer for single-cell transcriptomics data

https://github.com/cellprofiler/distribution • Science 13%

Everything needed to build CellProfiler for your favorite environment.