The Vascular Modeling Toolkit
The Vascular Modeling Toolkit: A Python Library for the Analysis of Tubular Structures in Medical Images - Published in JOSS (2018)
GrainLearning
GrainLearning: A Bayesian uncertainty quantification toolbox for discrete and continuum numerical models of granular materials - Published in JOSS (2024)
Ripserer.jl
Ripserer.jl: flexible and efficient persistent homology computation in Julia - Published in JOSS (2020)
Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data
Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - Published in JOSS (2021)
RAMP
RAMP: stochastic simulation of user-driven energy demand time series - Published in JOSS (2024)
EmissV
EmissV: an R package to create vehicular and other emissions for air quality models - Published in JOSS (2018)
HOHQMesh
HOHQMesh: An All Quadrilateral/Hexahedral Unstructured Mesh Generator for High Order Elements - Published in JOSS (2024)
QSOnic
QSOnic: fast quasar continuum fitting - Published in JOSS (2024)
IMPPY3D
IMPPY3D: Image Processing in Python for 3D Image Stacks - Published in JOSS (2025)
Simmate
Simmate: a framework for materials science - Published in JOSS (2022)
CWInPy
CWInPy: A Python package for inference with continuous gravitational-wave signals from pulsars - Published in JOSS (2022)
TUM Open Infra Platform
TUM Open Infra Platform: an open source package for simultaneous viewing and analysis of digital models in the civil engineering domain - Published in JOSS (2022)
experDesign
experDesign: stratifying samples into batches with minimal bias - Published in JOSS (2021)
Adamantine 1.0
Adamantine 1.0: A Thermomechanical Simulator for Additive Manufacturing - Published in JOSS (2024)
Ecological Metadata as Linked Data
Ecological Metadata as Linked Data - Published in JOSS (2019)
TauFactor 2
TauFactor 2: A GPU accelerated python tool for microstructural analysis - Published in JOSS (2023)
lenstronomy II
lenstronomy II: A gravitational lensing software ecosystem - Published in JOSS (2021)
harmonize-wq
harmonize-wq: Standardize, clean and wrangle Water Quality Portal data into more analytic-ready formats - Published in JOSS (2024)
MorphoPy
MorphoPy: A python package for feature extraction of neural morphologies. - Published in JOSS (2020)