Cocktail Shaker
Cocktail Shaker: An open source drug expansion and enumeration library for peptides - Published in JOSS (2020)
pyomo
An object-oriented algebraic modeling language in Python for structured optimization problems.
spatial-efd
spatial-efd: A spatial-aware implementation of elliptical Fourier analysis - Published in JOSS (2017)
FELINE
FELINE: A Tool to Detect Emission Line Galaxies in 3D Data - Published in JOSS (2025)
AGNI
AGNI: A radiative-convective model for lava planet atmospheres - Published in JOSS (2025)
Statmanager-kr
Statmanager-kr: A User-friendly Statistical Package for Python in Pandas - Published in JOSS (2024)
pynguin
The PYthoN General UnIt Test geNerator is a test-generation tool for Python
compareMCMCs
compareMCMCs: An R package for studying MCMC efficiency - Published in JOSS (2022)
trafilatura
Python & Command-line tool to gather text and metadata on the Web: Crawling, scraping, extraction, output as CSV, JSON, HTML, MD, TXT, XML
medrxivr
medrxivr: Accessing and searching medRxiv and bioRxiv preprint data in R - Published in JOSS (2020)
rrcf
rrcf: Implementation of the Robust Random Cut Forest algorithm for anomaly detection on streams - Published in JOSS (2019)
AgriFoodPy
AgriFoodPy: a package for modelling food systems - Published in JOSS (2024)
DUGseis
DUGseis: A Python package for real-time and post-processing of picoseismicity - Published in JOSS (2024)
Taguette
Taguette: open-source qualitative data analysis - Published in JOSS (2021)
Telewavesim
Telewavesim: Python software for teleseismic body wave modeling - Published in JOSS (2019)
DiffOpt
DiffOpt: Parallel optimization of Jax models - Published in JOSS (2024)
Pyheartlib
Pyheartlib: A Python package for processing electrocardiogram signals - Published in JOSS (2024)
Devicely
Devicely: A Python package for reading, timeshifting and writing sensor data - Published in JOSS (2021)
hetGPy
hetGPy: Heteroskedastic Gaussian Process Modeling in Python - Published in JOSS (2025)
cogsworth
cogsworth: A Gala of COSMIC proportions combining binary stellar evolution and galactic dynamics - Published in JOSS (2025)