pymgpipe
pymgpipe: microbiome metabolic modeling in Python - Published in JOSS (2023)
pygen-structures
pygen-structures: A Python package to generate 3D molecular structures for simulations using the CHARMM forcefield - Published in JOSS (2020)
TimeSeriesClustering
TimeSeriesClustering: An extensible framework in Julia - Published in JOSS (2019)
GFAKluge
GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats - Published in JOSS (2019)
Synthia
Synthia: multidimensional synthetic data generation in Python - Published in JOSS (2021)
bikedata
bikedata - Published in JOSS (2017)
openaerostruct
OpenAeroStruct is a lightweight tool that performs aerostructural optimization using OpenMDAO.
HydDown
HydDown: A Python package for calculation of hydrogen (or other gas) pressure vessel filling and discharge - Published in JOSS (2021)
Lexicon-Mono-Seq, DOM Text Based Async MSA Viewer
Lexicon-Mono-Seq, DOM Text Based Async MSA Viewer - Published in JOSS (2019)
shmlast
shmlast: An improved implementation of Conditional Reciprocal Best Hits with LAST and Python - Published in JOSS (2017)
PASCal Python
PASCal Python: A Principal Axis Strain Calculator - Published in JOSS (2023)
Systole
Systole: A python package for cardiac signal synchrony and analysis - Published in JOSS (2022)
FHI-vibes
FHI-vibes: Ab Initio Vibrational Simulations - Published in JOSS (2020)
disksurf
disksurf: Extracting the 3D Structure of Protoplanetary Disks - Published in JOSS (2021)
repytah
repytah: An Open-Source Python Package for Building Aligned Hierarchies for Sequential Data - Published in JOSS (2023)
Castor
Castor: A C++ library to code "à la Matlab" - Published in JOSS (2022)
Heta compiler
Heta compiler: a software tool for the development of large-scale QSP models and compilation into simulation formats - Published in JOSS (2021)