PhyloX
PhyloX: A Python package for complete phylogenetic network workflows - Published in JOSS (2024)
LibSWIFFT - A fast C/C++ Library for the SWIFFT Secure Homomorphic Hash Function
LibSWIFFT - A fast C/C++ Library for the SWIFFT Secure Homomorphic Hash Function - Published in JOSS (2021)
The Glasgow Fortran Source-to-Source Compiler
The Glasgow Fortran Source-to-Source Compiler - Published in JOSS (2018)
sam2lca
sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files - Published in JOSS (2022)
spatPomp
spatPomp: An R package for spatiotemporal partially observed Markov process models - Published in JOSS (2024)
baseflow
baseflow: a MATLAB and GNU Octave package for baseflow recession analysis - Published in JOSS (2023)
HealpixMPI.jl
HealpixMPI.jl: an MPI-parallel implementation of the Healpix tessellation scheme in Julia - Published in JOSS (2024)
MLMOD
MLMOD: Machine Learning Methods for Data-Driven Modeling in LAMMPS - Published in JOSS (2023)
shinyssdtools
shinyssdtools: A web application for fitting Species Sensitivity Distributions (SSDs) - Published in JOSS (2021)
MSMetaEnhancer
MSMetaEnhancer: A Python package for mass spectra metadata annotation - Published in JOSS (2022)
NEoST
NEoST: A Python package for nested sampling of the neutron star equation of state - Published in JOSS (2025)
BTE
BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees - Published in JOSS (2022)
Mat-dp
Mat-dp: An open-source Python model for analysing material demand projections and their environmental implications, which result from building low-carbon systems. - Published in JOSS (2022)
phylosmith
phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects - Published in JOSS (2019)
riskclustr
riskclustr: Functions to Study Etiologic Heterogeneity - Published in JOSS (2019)
compboost
compboost: Modular Framework for Component-Wise Boosting - Published in JOSS (2018)
DataScribe
DataScribe: An Omeka S module for structured data transcription - Published in JOSS (2024)
UTDEventData
UTDEventData: An R package to access political event data - Published in JOSS (2019)
BayesEoR
BayesEoR: Bayesian 21-cm Power Spectrum Estimation from Interferometric Visibilities - Published in JOSS (2024)
pyEQUIB Python Package, an addendum to proEQUIB
pyEQUIB Python Package, an addendum to proEQUIB: IDL Library for Plasma Diagnostics and Abundance Analysis - Published in JOSS (2020)