graynet
graynet: single-subject morphometric networks for neuroscience connectivity applications - Published in JOSS (2018)
AutoClassWrapper
AutoClassWrapper: a Python wrapper for AutoClass C classification - Published in JOSS (2019)
BART-Survival
BART-Survival: A Bayesian machine learning approach to survival analyses in Python - Published in JOSS (2025)
webweb
webweb: a tool for creating, displaying, and sharing interactive network visualizations on the web - Published in JOSS (2019)
NuclearToolkit.jl
NuclearToolkit.jl: A Julia package for nuclear structure calculations - Published in JOSS (2022)
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
X.509-Compliant Hybrid Certificates for the Post-Quantum Transition
X.509-Compliant Hybrid Certificates for the Post-Quantum Transition - Published in JOSS (2019)
CancerSim
CancerSim: A Cancer Simulation Package for Python 3 - Published in JOSS (2020)
pyscses
pyscses: a PYthon Space-Charge Site-Explicit Solver - Published in JOSS (2019)
pysr3
pysr3: A Python Package for Sparse Relaxed Regularized Regression - Published in JOSS (2023)
MITgcm.jl
MITgcm.jl: a Julia Interface to the MITgcm - Published in JOSS (2024)
Gillespie.jl: Stochastic Simulation Algorithm in Julia
Gillespie.jl: Stochastic Simulation Algorithm in Julia - Published in JOSS (2016)
RadGEEToolbox: Streamlined Multispectral & SAR Analysis for Google Earth Engine
RadGEEToolbox: Streamlined Multispectral & SAR Analysis for Google Earth Engine - Published in JOSS (2025)
Mandyoc
Mandyoc: A finite element code to simulate thermochemical convection in parallel - Published in JOSS (2022)
AXITOM
AXITOM: A Python package for reconstruction of axisymmetric tomograms acquired by a conical beam - Published in JOSS (2019)
fastPLI
fastPLI: A Fiber Architecture Simulation Toolbox for 3D-PLI - Published in JOSS (2021)
SiSyPHE
SiSyPHE: A Python package for the Simulation of Systems of interacting mean-field Particles with High Efficiency - Published in JOSS (2021)
cuIBM
cuIBM: a GPU-based immersed boundary method code - Published in JOSS (2017)