PyGeoPressure
PyGeoPressure: Geopressure Prediction in Python - Published in JOSS (2018)
basilisk
basilisk: a Bioconductor package for managing Python environments - Published in JOSS (2022)
VPsearch
VPsearch: fast exact sequence similarity search for genomic sequences - Published in JOSS (2022)
GCIdentifier.jl
GCIdentifier.jl: A Julia package for identifying molecular fragments from SMILES - Published in JOSS (2024)
HistoJS
HistoJS: Web-Based Analytical Tool for Advancing Multiplexed Images - Published in JOSS (2024)
ronswanson
ronswanson: Building Table Models for 3ML - Published in JOSS (2023)
SBIAX
SBIAX: Density-estimation simulation-based inference in JAX - Published in JOSS (2025)
DWIQC
DWIQC: A Python package for preprocessing and quality assurance of diffusion weighted images - Published in JOSS (2025)
partycls
partycls: A Python package for structural clustering - Published in JOSS (2021)
strandCheckR
strandCheckR: An R package for quantifying and removing double strand sequences for strand-specific RNA-seq - Published in JOSS (2019)
Pyripherals
Pyripherals: A Python Package for Communicating with Peripheral Electronic Devices - Published in JOSS (2022)
carl
carl: a likelihood-free inference toolbox - Published in JOSS (2016)
The PHITS Tools Python package for parsing, organizing, and analyzing results from the PHITS radiation transport and DCHAIN activation codes
The PHITS Tools Python package for parsing, organizing, and analyzing results from the PHITS radiation transport and DCHAIN activation codes - Published in JOSS (2025)
BCAWT
BCAWT: Automated tool for codon usage bias analysis for molecular evolution - Published in JOSS (2019)
SIMsalabim
SIMsalabim: An open-source drift-diffusion simulator for semiconductor devices - Published in JOSS (2022)
occupationMeasurement
occupationMeasurement: A Comprehensive Toolbox for Interactive Occupation Coding in Surveys - Published in JOSS (2023)
FixedPointFinder
FixedPointFinder: A Tensorflow toolbox for identifying and characterizing fixed points in recurrent neural networks - Published in JOSS (2018)
gcamfaostat
gcamfaostat: An R package to prepare, process, and synthesize FAOSTAT data for global agroeconomic and multisector dynamic modeling - Published in JOSS (2024)
pyemgpipeline
pyemgpipeline: A Python package for electromyography processing - Published in JOSS (2022)