https://github.com/broadinstitute/scp-rails-baseimage
Docker image builder repository to build Phusion/Passenger & Single Cell Portal docker images using managed GCR Ubuntu base image
https://github.com/broadinstitute/xipher
Tools for calling X-inactivation in scRNA-seq data
https://github.com/amazon-science/beyondcorrelation
Implementation of the paper: Beyond Correlation: The impact of human uncertainty in measuring the effectiveness of automatic evaluation and LLM-as-a-judge
https://github.com/broadinstitute/bibt-slack
Broad Institute BITS Blue Team repository for bibt-slack PyPI library.
fieldstack
Reusable R notebooks, scripts, and tools for applied data work and evaluation — built for use in the field across health, gender, climate, and education programs.
bayesianfitforecast
BayesianFitForecast: A comprehensive R toolbox for Bayesian parameter estimation and forecasting in ODE models, making advanced Bayesian methods accessible across diverse scientific domains.
https://github.com/broadinstitute/dig-loam-images
Docker images used for the LoamStream pipeline.
https://github.com/broadinstitute/single-cell-annotation
Red blood cell annotation
https://github.com/3mcloud/plotme
plot all the things in all the folders automatically but only if there have been changes