Projects

Scientific Software

Updated 9 months ago

AliNe: A Flexible and Efficient Nextflow Pipeline for Read Alignment - Published in JOSS (2025)

bbmap bmw-mem2 bowtie bowtie2 bwa bwa-sw graphmap2 hisat2 kallisto last minimap2 nextflow ngmlr novoalign nucmer salmon star starlong sublong subread

Scientific Software · Peer-reviewed

Updated 9 months ago

Snakemake workflow used to call peaks with Macs2

bowtie2 homer macs2 sambamba snakemake snakemake-workflow snakemake-wrappers

Updated 9 months ago

Align reads over a reference genome, filter aligned-reads, and mark duplicates

bowtie2 multiqc sambamba snakemake snakemake-workflow snakemake-wrappers

ecosyste.ms