Projects

Scientific Software

Updated 9 months ago

Pynteny: a Python package to perform synteny-aware, profile HMM-based searches in sequence databases - Published in JOSS (2023)

bioinformatics computational-biology genomics hmm hmmer metagenomics prokaryotic-genomes python synteny synteny-block

Engineering

Scientific Software · Peer-reviewed

Updated 9 months ago

Cython bindings and Python interface to HMMER3.

bioinformatics cython-library hidden-markov-model hmmer hmmer3 python-bindings python-library sequence-analysis

Updated 9 months ago

A lightweight rewrite of run_dbcan for better multithread performance

bioinformatics dbcan hmmer

ecosyste.ms