Scientific Software
Updated 10 months ago
Magphi
Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs - Published in JOSS (2022)
Scientific Software · Peer-reviewed
Updated 10 months ago
zol
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
Updated 10 months ago
bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
annotation
antimicrobial-genes-annotation
barrnap
genome-analysis
genome-browser
genomic-islands-prediction
insertion-sequences
ko-annotation
methylation-annotation
mobile-genetic-elements
nextflow
phigaro
pipeline
prophage-sequences-prediction
prophages
reproducible-research
rgi
rrna-prediction
virulence-factor
virulence-genes