Scientific Software
Updated 6 months ago
Magphi
Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs - Published in JOSS (2022)
Scientific Software · Peer-reviewed
Updated 6 months ago
zol
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
Updated 6 months ago
bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
annotation
antimicrobial-genes-annotation
barrnap
genome-analysis
genome-browser
genomic-islands-prediction
insertion-sequences
ko-annotation
methylation-annotation
mobile-genetic-elements
nextflow
phigaro
pipeline
prophage-sequences-prediction
prophages
reproducible-research
rgi
rrna-prediction
virulence-factor
virulence-genes