Scientific Software
Updated 6 months ago

Static Code Analysis for R — Peer-reviewed • Rank 27.0 • Science 100%

Static Code Analysis for R - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

extendr — Peer-reviewed • Rank 22.9 • Science 100%

extendr: Frictionless bindings for R and Rust - Published in JOSS (2024)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

rgee — Peer-reviewed • Rank 19.8 • Science 100%

rgee: An R package for interacting with Google Earth Engine - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

graphlayouts — Peer-reviewed • Rank 19.0 • Science 100%

graphlayouts: Layout algorithms for network visualizations in R - Published in JOSS (2023)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

tidytext — Peer-reviewed • Rank 22.7 • Science 95%

tidytext: Text Mining and Analysis Using Tidy Data Principles in R - Published in JOSS (2016)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

The drake R package — Peer-reviewed • Rank 22.7 • Science 95%

The drake R package: a pipeline toolkit for reproducibility and high-performance computing - Published in JOSS (2018)

Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

The targets R package — Peer-reviewed • Rank 22.4 • Science 95%

The targets R package: a dynamic Make-like function-oriented pipeline toolkit for reproducibility and high-performance computing - Published in JOSS (2021)

Engineering Sociology Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

BridgeStan — Peer-reviewed • Rank 17.2 • Science 100%

BridgeStan: Efficient in-memory access to the methods of a Stan model - Published in JOSS (2023)

Physics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Using the tidyverse with terra objects — Peer-reviewed • Rank 16.5 • Science 100%

Using the tidyverse with terra objects: the tidyterra package - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

bayestestR — Peer-reviewed • Rank 21.3 • Science 95%

bayestestR: Describing Effects and their Uncertainty, Existence and Significance within the Bayesian Framework - Published in JOSS (2019)

Engineering Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

mlr3 — Peer-reviewed • Rank 21.2 • Science 95%

mlr3: A modern object-oriented machine learning framework in R - Published in JOSS (2019)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

visdat — Peer-reviewed • Rank 21.1 • Science 95%

visdat: Visualising Whole Data Frames - Published in JOSS (2017)

Scientific Software
Updated 6 months ago

osrm — Peer-reviewed • Rank 15.9 • Science 100%

osrm: Interface Between R and the OpenStreetMap-Based Routing Service OSRM - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

qualtRics — Peer-reviewed • Rank 20.4 • Science 95%

qualtRics: retrieve survey data using the Qualtrics API - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

gratia — Peer-reviewed • Rank 17.3 • Science 98%

gratia: An R package for exploring generalized additive models - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

effectsize — Peer-reviewed • Rank 20.1 • Science 95%

effectsize: Estimation of Effect Size Indices and Standardized Parameters - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

Managing Larger Data on a GitHub Repository — Peer-reviewed • Rank 20.0 • Science 95%

Managing Larger Data on a GitHub Repository - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Fast, Consistent Tokenization of Natural Language Text — Peer-reviewed • Rank 19.9 • Science 95%

Fast, Consistent Tokenization of Natural Language Text - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

performance — Peer-reviewed • Rank 21.8 • Science 93%

performance: An R Package for Assessment, Comparison and Testing of Statistical Models - Published in JOSS (2021)

Engineering (40%) Earth and Environmental Sciences (40%) Economics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Generating CodeMeta Metadata for R Packages — Peer-reviewed • Rank 19.6 • Science 95%

Generating CodeMeta Metadata for R Packages - Published in JOSS (2017)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

insight — Peer-reviewed • Rank 21.4 • Science 93%

insight: A Unified Interface to Access Information from Model Objects in R - Published in JOSS (2019)

Engineering (40%) Economics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

simstudy — Peer-reviewed • Rank 14.2 • Science 100%

simstudy: Illuminating research methods through data generation - Published in JOSS (2020)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Visualizations with statistical details — Peer-reviewed • Rank 19.1 • Science 95%

Visualizations with statistical details: The 'ggstatsplot' approach - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

ggalluvial — Peer-reviewed • Rank 19.0 • Science 95%

ggalluvial: Layered Grammar for Alluvial Plots - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

osmdata — Peer-reviewed • Rank 20.9 • Science 93%

osmdata - Published in JOSS (2017)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

GNOLL — Peer-reviewed • Rank 13.3 • Science 100%

GNOLL: Efficient Multi-Lingual Software for Real-World Dice Notation and Extensions - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

rdata — Peer-reviewed • Rank 15.1 • Science 98%

rdata: A Python library for R datasets - Published in JOSS (2024)

Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

rintrojs — Peer-reviewed • Rank 17.8 • Science 95%

rintrojs: A Wrapper for the Intro.js Library - Published in JOSS (2016)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

sjmisc — Peer-reviewed • Rank 19.1 • Science 93%

sjmisc: Data and Variable Transformation Functions - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

see — Peer-reviewed • Rank 19.0 • Science 93%

see: An R Package for Visualizing Statistical Models - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

modelbased — Peer-reviewed • Rank 18.7 • Science 93%

modelbased: An R package to make the most out of your statistical models through marginal means, marginal effects, and model predictions - Published in JOSS (2025)

Artificial Intelligence and Machine Learning (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

tidyhydat — Peer-reviewed • Rank 18.7 • Science 93%

tidyhydat: Extract and Tidy Canadian Hydrometric Data - Published in JOSS (2017)

Scientific Software
Updated 6 months ago

tidygeocoder — Peer-reviewed • Rank 16.6 • Science 95%

tidygeocoder: An R package for geocoding - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

measr — Peer-reviewed • Rank 11.5 • Science 100%

measr: Bayesian psychometric measurement using Stan - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

oce — Peer-reviewed • Rank 16.4 • Science 95%

oce: an R package for Oceanographic Analysis - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

coalitions — Peer-reviewed • Rank 16.4 • Science 95%

coalitions: Coalition probabilities in multi-party democracies - Published in JOSS (2018)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

cffr — Peer-reviewed • Rank 13.3 • Science 98%

cffr: Generate Citation File Format Metadata for R Packages - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

REDCapTidieR — Peer-reviewed • Rank 16.3 • Science 95%

REDCapTidieR: Extracting complex REDCap databases into tidy tables - Published in JOSS (2024)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

GSODR — Peer-reviewed • Rank 18.3 • Science 93%

GSODR: Global Summary Daily Weather Data in R - Published in JOSS (2017)

Scientific Software
Updated 6 months ago

Rdataretriever — Peer-reviewed • Rank 18.3 • Science 93%

Rdataretriever: R Interface to the Data Retriever - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

BGmisc — Peer-reviewed • Rank 11.2 • Science 100%

BGmisc: An R Package for Extended Behavior Genetics Analysis - Published in JOSS (2024)

Engineering (32%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

FielDHub — Peer-reviewed • Rank 16.1 • Science 95%

FielDHub: A Shiny App for Design of Experiments in Life Sciences - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

neotoma2 — Peer-reviewed • Rank 10.8 • Science 100%

neotoma2: An R package to access data from the Neotoma Paleoecology Database - Published in JOSS (2023)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

USAboundaries — Peer-reviewed • Rank 17.5 • Science 93%

USAboundaries: Historical and Contemporary Boundaries of the United States of America - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

tidyHeatmap — Peer-reviewed • Rank 15.5 • Science 95%

tidyHeatmap: an R package for modular heatmap production based on tidy principles - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

nomisr — Peer-reviewed • Rank 17.4 • Science 93%

nomisr: Access 'Nomis' UK Labour Market Data - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

fmcmc — Peer-reviewed • Rank 13.9 • Science 96%

fmcmc: A friendly MCMC framework - Published in JOSS (2019)

Engineering (40%) Economics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

terrainr — Peer-reviewed • Rank 11.9 • Science 98%

terrainr: An R package for creating immersive virtual environments - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

covid19.analytics — Peer-reviewed • Rank 14.8 • Science 95%

covid19.analytics: An R Package to Obtain, Analyze and Visualize Data from the 2019 Coronavirus Disease Pandemic - Published in JOSS (2021)

Earth and Environmental Sciences Psychology Economics
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

jstor — Peer-reviewed • Rank 16.6 • Science 93%

jstor: Import and Analyse Data from Scientific Texts - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Zoomerjoin — Peer-reviewed • Rank 11.5 • Science 98%

Zoomerjoin: Superlatively-Fast Fuzzy Joins - Published in JOSS (2023)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

academictwitteR — Peer-reviewed • Rank 14.5 • Science 95%

academictwitteR: an R package to access the Twitter Academic Research Product Track v2 API endpoint - Published in JOSS (2021)

Artificial Intelligence and Machine Learning (40%) Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

comorbidity — Peer-reviewed • Rank 14.4 • Science 95%

comorbidity: An R package for computing comorbidity scores - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

set6 — Peer-reviewed • Rank 14.4 • Science 95%

set6: R6 Mathematical Sets Interface - Published in JOSS (2020)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

osmapiR — Peer-reviewed • Rank 11.0 • Science 98%

osmapiR: An 'OpenStreetMap API' implementation for R - Published in JOSS (2024)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

ijtiff — Peer-reviewed • Rank 15.9 • Science 93%

ijtiff: An R package providing TIFF I/O for ImageJ users - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

MiscMetabar — Peer-reviewed • Rank 10.8 • Science 98%

MiscMetabar: an R package to facilitate visualization and reproducibility in metabarcoding analysis - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

partition — Peer-reviewed • Rank 10.8 • Science 98%

partition: A fast and flexible framework for data reduction in R - Published in JOSS (2020)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

hydroscoper — Peer-reviewed • Rank 15.8 • Science 93%

hydroscoper: R interface to the Greek National Data Bank for Hydrological and Meteorological Information - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

The UCSCXenaTools R package — Peer-reviewed • Rank 13.8 • Science 95%

The UCSCXenaTools R package: a toolkit for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq - Published in JOSS (2019)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

finreportr — Peer-reviewed • Rank 15.7 • Science 93%

finreportr: Financial Data from U.S. Securities and Exchange Commission - Published in JOSS (2016)

Scientific Software
Updated 6 months ago

OpenTripPlanner for R — Peer-reviewed • Rank 13.7 • Science 95%

OpenTripPlanner for R - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

getCRUCLdata — Peer-reviewed • Rank 15.6 • Science 93%

getCRUCLdata: Use and Explore CRU CL v. 2.0 Climatology Elements in R - Published in JOSS (2017)

Scientific Software
Updated 6 months ago

Building, Importing, and Exporting GEXF Graph Files with rgexf — Peer-reviewed • Rank 13.6 • Science 95%

Building, Importing, and Exporting GEXF Graph Files with rgexf - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

stats19 — Peer-reviewed • Rank 13.6 • Science 95%

stats19: A package for working with open road crash data - Published in JOSS (2019)

Artificial Intelligence and Machine Learning (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

BayesianNetwork — Peer-reviewed • Rank 15.5 • Science 93%

BayesianNetwork: Interactive Bayesian Network Modeling and Analysis - Published in JOSS (2018)

Materials Science Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

modelStudio — Peer-reviewed • Rank 13.5 • Science 95%

modelStudio: Interactive Studio with Explanations for ML Predictive Models - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

modisfast — Peer-reviewed • Rank 10.4 • Science 98%

modisfast: An R package for fast and efficient access to MODIS, VIIRS and GPM Earth Observation data - Published in JOSS (2024)

Engineering (40%) Materials Science (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

The vtreat R package — Peer-reviewed • Rank 15.3 • Science 93%

The vtreat R package: a statistically sound data processor for predictive modeling - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

corporaexplorer — Peer-reviewed • Rank 14.8 • Science 93%

corporaexplorer: An R package for dynamic exploration of text collections - Published in JOSS (2019)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

gaussplotR — Peer-reviewed • Rank 7.7 • Science 100%

gaussplotR: Fit, Predict and Plot 2D-Gaussians in R - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

APackOfTheClones — Peer-reviewed • Rank 9.6 • Science 98%

APackOfTheClones: Visualization of clonal expansion with circle packing - Published in JOSS (2024)

Biochemistry, Genetics and Molecular Biology (34%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

bcdata — Peer-reviewed • Rank 14.3 • Science 93%

bcdata: An R package for searching & retrieving data from the B.C. Data Catalogue - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

unifir — Peer-reviewed • Rank 9.2 • Science 98%

unifir: A Unifying API for Working with Unity in R - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

geostan — Peer-reviewed • Rank 12.1 • Science 95%

geostan: An R package for Bayesian spatial analysis - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

The psycho Package — Peer-reviewed • Rank 14.0 • Science 93%

The psycho Package: an Efficient and Publishing-Oriented Workflow for Psychological Science - Published in JOSS (2018)

Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

hillR — Peer-reviewed • Rank 11.9 • Science 95%

hillR: taxonomic, functional, and phylogenetic diversity and similarity through Hill Numbers - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

The sspm R package for spatially-explicit surplus production population models — Peer-reviewed • Rank 8.8 • Science 98%

The sspm R package for spatially-explicit surplus production population models - Published in JOSS (2023)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

experDesign — Peer-reviewed • Rank 8.6 • Science 98%

experDesign: stratifying samples into batches with minimal bias - Published in JOSS (2021)

Sociology (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

patRoon 2.0 — Peer-reviewed • Rank 6.5 • Science 100%

patRoon 2.0: Improved non-target analysis workflows including automated transformation product screening - Published in JOSS (2022)

Sociology
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

daiquiri — Peer-reviewed • Rank 11.5 • Science 95%

daiquiri: Data Quality Reporting for Temporal Datasets - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

rsimsum — Peer-reviewed • Rank 11.5 • Science 95%

rsimsum: Summarise results from Monte Carlo simulation studies - Published in JOSS (2018)

Physics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

phylogram — Peer-reviewed • Rank 13.3 • Science 93%

phylogram: an R package for phylogenetic analysis with nested lists - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

wdpar — Peer-reviewed • Rank 11.3 • Science 95%

wdpar: Interface to the World Database on Protected Areas - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

Suppdata — Peer-reviewed • Rank 11.2 • Science 95%

Suppdata: Downloading Supplementary Data from Published Manuscripts - Published in JOSS (2018)

Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

jointVIP — Peer-reviewed • Rank 8.1 • Science 98%

jointVIP: Prioritizing variables in observational study design with joint variable importance plot in R - Published in JOSS (2024)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

piar — Peer-reviewed • Rank 8.1 • Science 98%

piar: Price Index Aggregation in R - Published in JOSS (2024)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

datastructures — Peer-reviewed • Rank 11.0 • Science 95%

datastructures: An R package for organisation and storage of data - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

rempsyc — Peer-reviewed • Rank 5.9 • Science 100%

rempsyc: Convenience functions for psychology - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

rcites — Peer-reviewed • Rank 10.9 • Science 95%

rcites: An R package to access the CITES Speciesplus database - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

musclesyneRgies — Peer-reviewed • Rank 10.8 • Science 95%

musclesyneRgies: factorization of electromyographic data in R with sensible defaults - Published in JOSS (2022)

Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

ollamar — Peer-reviewed • Rank 12.7 • Science 93%

ollamar: An R package for running large language models - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

lpjmlkit — Peer-reviewed • Rank 7.7 • Science 98%

lpjmlkit: A toolkit for operating LPJmL and model-specific data processing - Published in JOSS (2024)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

lfda — Peer-reviewed • Rank 12.7 • Science 93%

lfda: Local Fisher Discriminant Analysis in R - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

pdfsearch — Peer-reviewed • Rank 12.6 • Science 93%

pdfsearch: Search Tools for PDF Files - Published in JOSS (2018)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

universalmotif — Peer-reviewed • Rank 5.6 • Science 100%

universalmotif: An R package for biological motif analysis - Published in JOSS (2024)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

polyCub — Peer-reviewed • Rank 12.4 • Science 93%

polyCub: An R package for Integration over Polygons - Published in JOSS (2019)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

individual — Peer-reviewed • Rank 7.4 • Science 98%

individual: An R package for individual-based epidemiological models - Published in JOSS (2021)

Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed