Scientific Software
Updated 6 months ago

PlatiPy — Peer-reviewed • Rank 15.1 • Science 100%

PlatiPy: Processing Library and Analysis Toolkit for Medical Imaging in Python - Published in JOSS (2023)

Computer Science Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

small_gicp — Peer-reviewed • Rank 17.0 • Science 98%

small_gicp: Efficient and parallel algorithms for point cloud registration - Published in JOSS (2024)

Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

PyCPD — Peer-reviewed • Rank 17.1 • Science 95%

PyCPD: Pure NumPy Implementation of the Coherent Point Drift Algorithm - Published in JOSS (2022)

Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

mrivis — Peer-reviewed • Rank 9.8 • Science 93%

mrivis: Medical image visualization library for neuroscience in python - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

QMRTools — Peer-reviewed • Rank 5.6 • Science 93%

QMRTools: a Mathematica toolbox for quantitative MRI analysis. - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

BrainGlobe Atlas API — Peer-reviewed • Rank 18.2 • Science 77%

BrainGlobe Atlas API: a common interface for neuroanatomical atlases - Published in JOSS (2020)

Scientific Software · Peer-reviewed
Updated 6 months ago

simpleitk • Rank 23.9 • Science 49%

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

Updated 6 months ago

mcmicro • Rank 5.6 • Science 67%

An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.

Updated 6 months ago

globalmatch • Rank 5.4 • Science 64%

GlobalMatch: Registration of forest terrestrial point clouds by global matching of relative stem positions [ISPRS 2023]

Updated 6 months ago

https://github.com/brainglobe/brainreg-napari • Rank 9.1 • Science 51%

Automated 3D brain registration in napari with support for multiple species and atlases.

Updated 6 months ago

https://github.com/dipy/dipy • Rank 23.4 • Science 36%

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

Updated 6 months ago

symmetrize • Rank 8.8 • Science 36%

Symmetrization of 2D pattern using nonrigid landmark registration

Updated 6 months ago

https://github.com/antsx/antsr • Science 59%

R interface to the ANTs biomedical image processing library

Updated 6 months ago

microaligner • Science 44%

Image registration (alignment) software for large microscopy images

Updated 6 months ago

https://github.com/ait-assistive-autonomous-systems/2d_nonrigid_tricubic_pointcloud_registration • Science 57%

Prototype implementation of a non-rigid point cloud registration algorithm using piece-wise tricubic polynomials as transformation model.

Updated 6 months ago

brainreg • Science 49%

Automated 3D brain registration with support for multiple species and atlases.

Updated 6 months ago

craniumpy • Science 67%

A tool for the alignment and basic analysis of 3D meshes, focused on craniofacial applications.

Updated 6 months ago

pituitary-segmentation-tool • Science 44%

This repository contains code that normalizes head MRIs segments the pituitary gland.

Updated 6 months ago

https://github.com/ait-assistive-autonomous-systems/3d_nonrigid_tricubic_pointcloud_registration • Science 57%

Non-rigid ICP-like point cloud registration algorithm using piece-wise tricubic polynomials as transformation model.