Interfere: Studying Intervention Response Prediction in Complex Dynamic Models
Interfere: Studying Intervention Response Prediction in Complex Dynamic Models - Published in JOSS (2026)
RESOURCECODE
RESOURCECODE: A Python package for statistical analysis of sea-state hindcast data - Published in JOSS (2023)
Castellum
Castellum: A participant management tool for scientific studies - Published in JOSS (2022)
PyGBe-LSPR: Python and GPU Boundary-integral solver for electrostatics
PyGBe-LSPR: Python and GPU Boundary-integral solver for electrostatics - Published in JOSS (2017)
SunPeek: Open-Source Tool for Performance Analytics of Solar Thermal Plants
SunPeek: Open-Source Tool for Performance Analytics of Solar Thermal Plants - Published in JOSS (2026)
CEPS: a cardiac electrophysiology exploration tool for new mathematical models and methods
CEPS: a cardiac electrophysiology exploration tool for new mathematical models and methods - Published in JOSS (2025)
FullSWOF: Full Shallow-Water equations for Overland Flow
FullSWOF: Full Shallow-Water equations for Overland Flow - Published in JOSS (2017)
exa-AMD: A Scalable Workflow for Accelerating AI-Assisted Materials Discovery and Design
exa-AMD: A Scalable Workflow for Accelerating AI-Assisted Materials Discovery and Design - Published in JOSS (2025)
BONSAI: A framework for processing and analysing Electronic Health Records (EHR) data using transformer-based models
BONSAI: A framework for processing and analysing Electronic Health Records (EHR) data using transformer-based models - Published in JOSS (2025)
CCS-Lib: A Python package to elicit latent knowledge from LLMs
CCS-Lib: A Python package to elicit latent knowledge from LLMs - Published in JOSS (2025)
maze-dataset: Maze Generation with Algorithmic Variety and Representational Flexibility
maze-dataset: Maze Generation with Algorithmic Variety and Representational Flexibility - Published in JOSS (2025)
HELPS: an R package to project future Heat Effects on Labor Productivity by Sector
HELPS: an R package to project future Heat Effects on Labor Productivity by Sector - Published in JOSS (2025)
PyDTS: A Python Package for Discrete-Time Survival Analysis with Competing Risks and Optional Penalization
PyDTS: A Python Package for Discrete-Time Survival Analysis with Competing Risks and Optional Penalization - Published in JOSS (2025)
fathon: A Python package for a fast computation of detrendend fluctuation analysis and related algorithms
fathon: A Python package for a fast computation of detrendend fluctuation analysis and related algorithms - Published in JOSS (2020)
fctSnPM: Factorial ANOVA and post-hoc tests for Statistical nonParametric Mapping in MATLAB
fctSnPM: Factorial ANOVA and post-hoc tests for Statistical nonParametric Mapping in MATLAB - Published in JOSS (2021)
Integrated hydrologic model development and postprocessing for GSFLOW using pyGSFLOW
Integrated hydrologic model development and postprocessing for GSFLOW using pyGSFLOW - Published in JOSS (2022)
SimpleSDMLayers.jl and GBIF.jl: A Framework for Species Distribution Modeling in Julia
SimpleSDMLayers.jl and GBIF.jl: A Framework for Species Distribution Modeling in Julia - Published in JOSS (2021)
SlideRule: Enabling rapid, scalable, open science for the NASA ICESat-2 mission and beyond
SlideRule: Enabling rapid, scalable, open science for the NASA ICESat-2 mission and beyond - Published in JOSS (2023)
ShakeNBreak: Navigating the defect configurational landscape
ShakeNBreak: Navigating the defect configurational landscape - Published in JOSS (2022)
StateSpaceDynamics.jl: A Julia package for probabilistic state space models (SSMs)
StateSpaceDynamics.jl: A Julia package for probabilistic state space models (SSMs) - Published in JOSS (2025)
embedplyr: Tools for Working With Text Embeddings
embedplyr: Tools for Working With Text Embeddings - Published in JOSS (2025)
GPJax: A Gaussian Process Framework in JAX
GPJax: A Gaussian Process Framework in JAX - Published in JOSS (2022)
Blini: lightweight nucleotide sequence search and dereplication
Blini: lightweight nucleotide sequence search and dereplication - Published in JOSS (2026)
pythainer: composable and reusable Docker builders and runners for reproducible research
pythainer: composable and reusable Docker builders and runners for reproducible research - Published in JOSS (2026)
genomesizeR: An R package for genome size prediction
genomesizeR: An R package for genome size prediction - Published in JOSS (2026)
anesthetic: nested sampling visualisation
anesthetic: nested sampling visualisation - Published in JOSS (2019)
HiGP: A high-performance Python package for Gaussian Processes
HiGP: A high-performance Python package for Gaussian Processes - Published in JOSS (2026)
pyMassEvac: A Python package for simulating multi-domain mass evacuation operations
pyMassEvac: A Python package for simulating multi-domain mass evacuation operations - Published in JOSS (2026)
RustSASA: A Rust Crate for Accelerated Solvent Accessible Surface Area Calculations
RustSASA: A Rust Crate for Accelerated Solvent Accessible Surface Area Calculations - Published in JOSS (2026)
ASTRA: A Python Package for Cross-Instrument Stellar and Telluric Template Construction
ASTRA: A Python Package for Cross-Instrument Stellar and Telluric Template Construction - Published in JOSS (2026)
Viable North Sea (ViNoS): A NetLogo Agent-based Model of German Small-scale Fisheries
Viable North Sea (ViNoS): A NetLogo Agent-based Model of German Small-scale Fisheries - Published in JOSS (2024)
torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch
torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch - Published in JOSS (2026)
geopolrisk-py: A Python-Based Library to Operationalize the Geopolitical Supply Risk Method for use in Life Cycle Assessment and Comparative Risk Assessment
geopolrisk-py: A Python-Based Library to Operationalize the Geopolitical Supply Risk Method for use in Life Cycle Assessment and Comparative Risk Assessment - Published in JOSS (2026)
SC2Tools: StarCraft II Toolset and Dataset API
SC2Tools: StarCraft II Toolset and Dataset API - Published in JOSS (2026)
DYCO: A Python package to dynamically detect and compensate for time lags in ecosystem time series
DYCO: A Python package to dynamically detect and compensate for time lags in ecosystem time series - Published in JOSS (2021)
RANO2.0-assist: A 3D Slicer Extension for (semi-)automatic Assessment of Response to Glioma Treatment
RANO2.0-assist: A 3D Slicer Extension for (semi-)automatic Assessment of Response to Glioma Treatment - Published in JOSS (2026)
solve_nivp: A Python toolkit for integrating nonsmooth dynamical systems
solve_nivp: A Python toolkit for integrating nonsmooth dynamical systems - Published in JOSS (2026)
msibi: Multistate Iterative Boltzmann Inversion
msibi: Multistate Iterative Boltzmann Inversion - Published in JOSS (2026)
<em>BatchPlanet</em>: Batch access and processing of PlanetScope imagery for spatiotemporal analysis in R
<em>BatchPlanet</em>: Batch access and processing of PlanetScope imagery for spatiotemporal analysis in R - Published in JOSS (2026)
h-NUMO: A high-performance discontinuous-Galerkin code for hydrostatic ocean modelling
h-NUMO: A high-performance discontinuous-Galerkin code for hydrostatic ocean modelling - Published in JOSS (2026)
gtk-fortran: a GTK+ binding to build Graphical User Interfaces in Fortran
gtk-fortran: a GTK+ binding to build Graphical User Interfaces in Fortran - Published in JOSS (2019)
HODLRlib: A Library for Hierarchical Matrices
HODLRlib: A Library for Hierarchical Matrices - Published in JOSS (2019)
MNE-RSA: Representational Similarity Analysis on EEG, MEG and fMRI data
MNE-RSA: Representational Similarity Analysis on EEG, MEG and fMRI data - Published in JOSS (2025)
Lenapy: Enhancing xarray for multidimensional geophysical data analysis
Lenapy: Enhancing xarray for multidimensional geophysical data analysis - Published in JOSS (2025)
METISSE: METhod of Interpolation for Single Star Evolution
METISSE: METhod of Interpolation for Single Star Evolution - Published in JOSS (2025)
rtimicropem: an R package supporting the analysis of RTI MicroPEM output files
rtimicropem: an R package supporting the analysis of RTI MicroPEM output files - Published in JOSS (2017)
Virtual Bumblebees Artificial Life Simulation
Virtual Bumblebees Artificial Life Simulation - Published in JOSS (2017)
Ramble: Parser Combinator for R
Ramble: Parser Combinator for R - Published in JOSS (2017)
Weave.jl: Scientific Reports Using Julia
Weave.jl: Scientific Reports Using Julia - Published in JOSS (2017)
lawn: An R client for the Turf Javascript Library for Geospatial Analysis
lawn: An R client for the Turf Javascript Library for Geospatial Analysis - Published in JOSS (2017)
pyuvdata: an interface for astronomical interferometeric datasets in python
pyuvdata: an interface for astronomical interferometeric datasets in python - Published in JOSS (2017)
KraljicMatrix: An R package for implementing the Kraljic Matrix to strategically analyze a firm’s purchasing portfolio
KraljicMatrix: An R package for implementing the Kraljic Matrix to strategically analyze a firm’s purchasing portfolio - Published in JOSS (2017)
hddtools: Hydrological Data Discovery Tools
hddtools: Hydrological Data Discovery Tools - Published in JOSS (2017)
plater: Read, Tidy, and Display Data from Microtiter Plates
plater: Read, Tidy, and Display Data from Microtiter Plates - Published in JOSS (2016)
LAS: an integrated language analysis tool for multiple languages
LAS: an integrated language analysis tool for multiple languages - Published in JOSS (2016)
GFF3toEMBL: Preparing annotated assemblies for submission to EMBL
GFF3toEMBL: Preparing annotated assemblies for submission to EMBL - Published in JOSS (2016)
sourmash: a library for MinHash sketching of DNA
sourmash: a library for MinHash sketching of DNA - Published in JOSS (2016)
PsychoPhysioPipeline: A Processing and Analysis Pipeline for Psychophysiological Research
PsychoPhysioPipeline: A Processing and Analysis Pipeline for Psychophysiological Research - Published in JOSS (2016)
cartography: Create and Integrate Maps in your R Workflow
cartography: Create and Integrate Maps in your R Workflow - Published in JOSS (2016)
mst_clustering: Clustering via Euclidean Minimum Spanning Trees
mst_clustering: Clustering via Euclidean Minimum Spanning Trees - Published in JOSS (2016)
Grafoscopio: A moldable tool for literate computing and reproducible research
Grafoscopio: A moldable tool for literate computing and reproducible research - Published in JOSS (2017)
treex: a Python package for manipulating rooted trees
treex: a Python package for manipulating rooted trees - Published in JOSS (2019)
Capytaine: a Python-based linear potential flow solver
Capytaine: a Python-based linear potential flow solver - Published in JOSS (2019)
Autosubmit GUI
Autosubmit GUI: A Javascript-based Graphical User Interface to Monitor Experiments Workflow Execution - Published in JOSS (2021)
Tamaas
Tamaas: a library for elastic-plastic contact of periodic rough surfaces - Published in JOSS (2020)
MeatPy: A Python Framework for Limit Order Book Reconstruction and Analysis
MeatPy: A Python Framework for Limit Order Book Reconstruction and Analysis - Published in JOSS (2026)
bittrex: An R client for the Bittrex Crypto-Currency Exchange
bittrex: An R client for the Bittrex Crypto-Currency Exchange - Published in JOSS (2017)
RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences
RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences - Published in JOSS (2016)
ComPlot
ComPlot: Comparison Plotter to visually evaluate ocean model simulations - Published in JOSS (2017)
DEVSIM: A TCAD Semiconductor Device Simulator
DEVSIM: A TCAD Semiconductor Device Simulator - Published in JOSS (2022)
FAIRLinked: Data FAIRification Tools for Materials Data Science
FAIRLinked: Data FAIRification Tools for Materials Data Science - Published in JOSS (2026)
CGView.js: a JavaScript package for visualizing small genomes
CGView.js: a JavaScript package for visualizing small genomes - Published in JOSS (2026)
Vibrant: A Post-Processing Tool for Computational Vibrational Spectroscopy of Molecules, Liquids and Materials
Vibrant: A Post-Processing Tool for Computational Vibrational Spectroscopy of Molecules, Liquids and Materials - Published in JOSS (2026)
Surfaxe: Systematic surface calculations
Surfaxe: Systematic surface calculations - Published in JOSS (2021)
plutus: An R package to calculate electricity investments and stranded assets from the Global Change Analysis Model (GCAM)
plutus: An R package to calculate electricity investments and stranded assets from the Global Change Analysis Model (GCAM) - Published in JOSS (2021)
AgentPy: A package for agent-based modeling in Python
AgentPy: A package for agent-based modeling in Python - Published in JOSS (2021)
Metatheory.jl: Fast and Elegant Algebraic Computation in Julia with Extensible Equality Saturation
Metatheory.jl: Fast and Elegant Algebraic Computation in Julia with Extensible Equality Saturation - Published in JOSS (2021)
ddop: A python package for data-driven operations management
ddop: A python package for data-driven operations management - Published in JOSS (2021)
Leafmap: A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment
Leafmap: A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment - Published in JOSS (2021)
SODAR Core: a Django-based framework for scientific data management and analysis web apps
SODAR Core: a Django-based framework for scientific data management and analysis web apps - Published in JOSS (2020)
DEEPaaS API: a REST API for Machine Learning and Deep Learning models
DEEPaaS API: a REST API for Machine Learning and Deep Learning models - Published in JOSS (2019)
tidyLPA: An R Package to Easily Carry Out Latent Profile Analysis (LPA) Using Open-Source or Commercial Software
tidyLPA: An R Package to Easily Carry Out Latent Profile Analysis (LPA) Using Open-Source or Commercial Software - Published in JOSS (2018)
samplics: a Python Package for selecting, weighting and analyzing data from complex sampling designs.
samplics: a Python Package for selecting, weighting and analyzing data from complex sampling designs. - Published in JOSS (2021)
sweater: Speedy Word Embedding Association Test and Extras Using R
sweater: Speedy Word Embedding Association Test and Extras Using R - Published in JOSS (2022)
SenSARP: A pipeline to pre-process Sentinel-1 SLC data by using ESA SNAP Sentinel-1 Toolbox
SenSARP: A pipeline to pre-process Sentinel-1 SLC data by using ESA SNAP Sentinel-1 Toolbox - Published in JOSS (2022)
ERAD: A Graph-Based Tool for Energy Resilience Analysis of Electric Distribution Systems
ERAD: A Graph-Based Tool for Energy Resilience Analysis of Electric Distribution Systems - Published in JOSS (2025)
areal: An R package for areal weighted interpolation
areal: An R package for areal weighted interpolation - Published in JOSS (2019)
GPP, the Generic Preprocessor
GPP, the Generic Preprocessor - Published in JOSS (2020)
multivar_horner: A Python package for computing Horner factorisations of multivariate polynomials
multivar_horner: A Python package for computing Horner factorisations of multivariate polynomials - Published in JOSS (2020)
ROSS - Rotordynamic Open Source Software
ROSS - Rotordynamic Open Source Software - Published in JOSS (2020)
Visualization of Multi-Dimensional Data -- The data-slicer Package
Visualization of Multi-Dimensional Data -- The data-slicer Package - Published in JOSS (2021)
Calzone: A Geant4 Python wrapper for the simulation of outdoor particle detectors
Calzone: A Geant4 Python wrapper for the simulation of outdoor particle detectors - Published in JOSS (2025)
OrNet - a Python Toolkit to Model the Diffuse Structure of Organelles as Social Networks
OrNet - a Python Toolkit to Model the Diffuse Structure of Organelles as Social Networks - Published in JOSS (2020)
pirecorder: Controlled and automated image and video recording with the raspberry pi
pirecorder: Controlled and automated image and video recording with the raspberry pi - Published in JOSS (2020)
NeuroDiffEq: A Python package for solving differential equations with neural networks
NeuroDiffEq: A Python package for solving differential equations with neural networks - Published in JOSS (2020)
DearScholar: A mobile application to conduct qualitative and quantitative diary research
DearScholar: A mobile application to conduct qualitative and quantitative diary research - Published in JOSS (2020)
mixR: An R package for Finite Mixture Modeling for Both Raw and Binned Data
mixR: An R package for Finite Mixture Modeling for Both Raw and Binned Data - Published in JOSS (2022)
dKMC: Delocalised kinetic Monte Carlo for simulating fundamental transport processes involving partially delocalised carriers in disordered materials
dKMC: Delocalised kinetic Monte Carlo for simulating fundamental transport processes involving partially delocalised carriers in disordered materials - Published in JOSS (2025)
xbitinfo: Compressing geospatial data based on information theory
xbitinfo: Compressing geospatial data based on information theory - Published in JOSS (2025)
geemap: A Python package for interactive mapping with Google Earth Engine
geemap: A Python package for interactive mapping with Google Earth Engine - Published in JOSS (2020)