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Open Source Science

Biochemistry, Genetics and Molecular Biology

Life Sciences

Field Statistics

Total Projects: 16
Average Confidence: 51%

High Confidence (≥70%): 4
Medium Confidence (50-70%): 1
Low Confidence (<50%): 11

Field Keywords:
protein gene genome dna rna sequencing expression mutation pathway metabolic enzyme transcription translation chromosome allele crispr pcr cloning vector promoter
Common Packages:
scanpy seurat deseq2 gatk bioconductor edger
Scientific Indicators:
omics alignment variant snp indel
Top Keywords from Projects
single-cell (2) siamese-neural-network (1) neural-network (1) machine-learning (1) dimensionality-reduction (1) data-visualization (1) webgl (1) visualization (1) scatterplot (1) scatter-plot (1) regl (1) 2d (1) spatial-analysis (1) single-cell-analysis (1) python (1) pypi (1) image-analysis (1) single-cell-genomics (1) seurat (1) scrnaseq (1)
Related Fields

Projects in Biochemistry, Genetics and Molecular Biology (16)

scTree 87% confidence

scTree: An R package to generate antibody-compatible classifiers from single-cell sequencing data - Published in JOSS (2020)

Match signals: packages: 87%
Science Score
95%
scmorph 83% confidence

scmorph: a Python package for analysing single-cell morphological profiles - Published in JOSS (2025)

high-content morphological-profiling single-cell
Also in: Artificial Intelligence and Machine Learning
Match signals: packages: 83%
Science Score
98%
ivis 83% confidence

ivis: dimensionality reduction in very large datasets using Siamese Networks - Published in JOSS (2019)

data-visualization dimensionality-reduction machine-learning neural-network siamese-neural-network
Match signals: packages: 83%
Science Score
93%
SCIMAP 83% confidence

SCIMAP: A Python Toolkit for Integrated Spatial Analysis of Multiplexed Imaging Data - Published in JOSS (2024)

image-analysis pypi python single-cell-analysis spatial-analysis
Also in: Economics, Sociology
Match signals: packages: 83%
Science Score
95%
Kindel 60% confidence

Kindel: indel-aware consensus for nucleotide sequence alignments - Published in JOSS (2017)

Also in: Mathematics
Match signals: indicators: 60%
Science Score
93%
CusToM 40% confidence

CusToM: a Matlab toolbox for musculoskeletal simulation - Published in JOSS (2019)

Also in: Earth and Environmental Sciences, Engineering
Match signals: indicators: 40%
Science Score
59%
rnassqs 40% confidence

rnassqs: An R package to access agricultural data via the USDA National Agricultural Statistics Service (USDA-NASS) 'Quick Stats' API - Published in JOSS (2019)

Match signals: indicators: 40%
Science Score
95%
Singularity-EOS 40% confidence

Singularity-EOS: Performance Portable Equations of State and Mixed Cell Closures - Published in JOSS (2024)

Match signals: indicators: 40%
Science Score
98%
Acanthophis 40% confidence

Acanthophis: a comprehensive plant hologenomics pipeline - Published in JOSS (2024)

Match signals: indicators: 40%
Science Score
98%
Regl-Scatterplot 40% confidence

Regl-Scatterplot: A Scalable Interactive JavaScript-based Scatter Plot Library - Published in JOSS (2023)

2d regl scatter-plot scatterplot visualization webgl
Match signals: indicators: 40%
Science Score
100%
SODAR Core 40% confidence

SODAR Core: a Django-based framework for scientific data management and analysis web apps - Published in JOSS (2020)

Also in: Engineering
Match signals: indicators: 40%
Science Score
49%
cmip6-leap-feedstock 40% confidence

Match signals: indicators: 40%
Science Score
54%
ko 40% confidence

Kyber Odyssey: Charting a course for secure innovation in a post-Crowdstrike world

Also in: Earth and Environmental Sciences, Mathematics
Match signals: indicators: 40%
Science Score
36%
Varistran 40% confidence

Varistran: Anscombe's variance stabilizing transformation for RNA-seq gene expression data - Published in JOSS (2017)

Match signals: readme: 15% packages: 87% indicators: 20%
Science Score
96%
APackOfTheClones 34% confidence

APackOfTheClones: Visualization of clonal expansion with circle packing - Published in JOSS (2024)

clonal-analysis immune-repertoire immune-system r scrna-seq scrnaseq seurat single-cell single-cell-genomics
Match signals: readme: 5% packages: 83% indicators: 20%
Science Score
98%
nf-flu 30% confidence

Influenza genome analysis Nextflow workflow

Match signals: readme: 20% indicators: 60%
Science Score
49%