GitHub
https://github.com/cdcgov/irma
IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.
https://github.com/ceed/nekrs
Mirror of NekRS - GPU-oriented version of Nek5000. Please use the official repository, https://github.com/Nek5000/nekRS, to create issues and pull requests.
https://github.com/centre-for-humanities-computing/llm-tweet-classification
Classifying tweets with large language models with zero- and few-shot learning.
bout-dev
BOUT++: Plasma fluid finite-difference simulation code in curvilinear coordinate systems
https://github.com/cgeoga/vecchia.jl
Vecchia approximations for Gaussian log-likelihoods
https://github.com/ch-earth/openfews
Open and Shareable Delft-FEWS configuration for connecting the Next Generation of Forecasting Tools
https://github.com/chakravala/staticvectors.jl
Statically sized tuple vectors for Julia
https://github.com/cidgoh/nf-ncov-voc
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration with VIRUS-MVP (https://github.com/cidgoh/VIRUS-MVP) which can be used to visualize the mutation profiles and functional annotations.
rvadfast
This is the Python library for an unsupervised, fast method for robust voice activity detection (rVAD), as in the paper rVAD: An Unsupervised Segment-Based Robust Voice Activity Detection Method.
https://github.com/climate-service-center/dacstore
Acceptance analysis DACStorE
https://github.com/climatecompatiblegrowth/geo-x-data-prep
Spatial data preparation tools for GeoH2 users.
https://github.com/cmendl/rqcopt_hpc
HPC implementation of Riemannian quantum circuit optimization
https://github.com/coderefinery/testing
Automated testing - Preventing yourself and others from breaking your functioning code
https://github.com/coin-or/symphony
SYMPHONY is an open-source solver, callable library, and development framework for mixed-integer linear programs (MILPs) written in C with a number of unique features
https://github.com/comp-physics/meshfreetrixi.jl
Meshfree extension to Trixi using RBF-based numerics
https://github.com/compiler-campusminden/cpl-vorlesung-master-w25
Lecture "Concepts of Programming Languages" (M.Sc.) (Winter 2025/26)
sixarm_apm_install
SixArm.com » APM install scripts for the Atom package manager
https://github.com/computational-biology-aachen/synechocystis-photosynthesis-2024
A mathematical model of photosynthetic electron transport in Synechocystis sp. PCC 6803
map-rust-crate
Provide a `map!` macro that creates a new map collection then inserts key-value pairs.
markdown-text-to-bullet-lists
Script to transform from markdown text to bullet lists
https://github.com/corybrunson/ordr
manage ordinations and render biplots in a tidyverse workflow
https://github.com/cosbidev/ostransformer
Official implementation for the paper ``A Deep Learning Approach for Overall Survival Prediction in Lung Cancer with Missing Values´´
https://github.com/cosmo-pop/flowfusion
Generative modelling using diffusion models and flow-matching
math-base-special-atanf
Compute the arctangent of a single-precision floating-point number.
m4.4_sciwin_client
🦀 SciWIn Client: Reproducible computational Workflows made easy!
modified_llm_eval_harness
cloned from LLM eval harness, I added some datasets (MultiJail and XSTest) for my bachelor's thesis.
geoquery
This is a read-only mirror of the git repos at https://bioconductor.org
sphere-space-station-earth-one-and-beyond
Sphere Space Station Earth ONE and Beyond
2020-11-06-tudelft
Webpage for hypothetical Software Carpentries workshop at TU Delft
in-silico-protocols-4ml
Semantically enriched in-silico protocols for ML experiments to improve FAIRness, transparency and reproducibility
variantbenchmarking
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
intro-to-genome-browsers
Melbourne Bioinformatics Introduction to Genome Browsers workshop materials.
panoramaseq
a pipeline to process sequencing based spatial transccriptomics data from in-situ arrays
psat
PSAT: Pediatric Segmentation Approaches via Adult Augmentations and Transfer Learning
champsim
ChampSim is an open-source trace based simulator maintained at Texas A&M University and through the support of the computer architecture community.
awg-app
A web application for the online edition of the Anton Webern Gesamtausgabe
stats-array-stdevch
Calculate the standard deviation of an array using a one-pass trial mean algorithm.
dog-behavior-framework
A trust-based behavioural system for dogs, inspired by emotional logic and communication.
uncutgem
A prototype Full Stack fully Open Source NV Center Diamond Magnetometer
guida-per-tour-audulti-musei-civici
Guida per spiegare le Opere dei Musei Civici agli Adulti
ngclearn
NGC-Learn: Neurobiological Systems Design and Simulation in Python
BestApproximation
Very small Julia package to find the best exponential approximation of a given number
stockout-predictor-lightgbm
A lightweight and scalable machine learning pipeline using LightGBM to predict stock-out dates for retail inventory, built with structured time-series features.
dashboard
MOMSI Standard Landscape Review Curation Workflow & Multi-Omics Dashboard
qiskit-addon-sqd
Sample-based Quantum Diagonalization: Classically postprocess noisy quantum samples to yield more accurate eigenvalue estimations.