GitHub
treeoflife-toolbox
Source-specific tools for processing data (images) downloaded using distributed downloader and relies on MPI.
invariants_py
Calculate invariant trajectory representations from trajectory data and generate new trajectories from the invariants.
katmer
katmer is a powerful library for optimizing the design of optical thin films using automatic differentiation via JAX and Equinox, enabling efficient and accurate inverse design solutions.
system-hardware-id-generator
The System Hardware ID Generator Script is a Python tool designed to generate a unique Hardware ID (HWID) for the device it runs on. The HWID is represented as an 18-digit integer, making it efficient for storage in databases and indexing. This script can be used for software licensing, device authentication, and hardware inventory management.
viral-experiment-lip-analysis
Viral Experiment Limited Proteolysis (LiP) Analysis Workflow
complex-float64-base-assert-is-almost-equal
Test whether two double-precision complex floating-point numbers are approximately equal within a specified number of ULPs (units in the last place).
hmm_cpp
Complete C++ implementation of Hidden Markov Models with modern C++17 and Eigen
geolantis
Set of notebooks and landlab tutorials to get students started on the interactive Geolantis project.
reduced-wannier-representation
📜 Repo for the paper "Reduced Wannier Representation for Topological Bands" (PhysRevB.111.205139)
hferp-cryptanalysis
The code associated with HFERP Cryptanalysis Divide and Conquer and Support Minors attacks
https://github.com/emptymalei/scientific-computing
Some random tests for scientific computing
module-metadata-dm-practices
Metadata module for Data Management course (carpentries style)
cmg_tmg
A Continuous Gaussian Mixture Approach to Sample Multivariate Gaussians constrained by linear inequalities
retrieving-effectively-from-source-memory
This repository implements the source memory extension of the Retrieving Effectively from Memory (REM) model, as presented in Aytac et al. (2024, Cognitive Psychology).
https://github.com/emptymalei/learn-mongodb
Mongodb seems to be super helpful for data science.
https://github.com/gssi/metamodelsdataset-ecmfa2020
This repository contains the metamodels dataset used for the validation of the ECMFA2020 paper.
xmi2conll
Simple CLI to convert any annotated document in UIMA CAS XMI to CONLL format (IOB schema)
rubem
The Rainfall rUnoff Balance Enhanced Model (RUBEM) distributed hydrological model
https://github.com/emptymalei/oh-my-raspberrypi
my home self-hosted service on a pi
https://github.com/gssi/qualitymicroart
Replication bundle of the SAC2019 paper
https://github.com/emptymalei/universities-tuition
get university tuition data using wolframalpha
https://github.com/emptymalei/frameworks
Testing a new hugo template for "classified" entries
https://github.com/emptymalei/on-demand-shuttle
playing with the problem of on-demand shuttle
mpcc.jl
Data Structures for Optimization Models with Complementarity Constraints
https://github.com/gssi/icsa2024ae
Public repository for the ICSA 2024 Paper Artifact Evaluation
gccb-physics-museum
This project is a reflection of `Digital-Grinnell/collectionbuilder-csv` with Physics Museum-specific content gleaned from Charlie Duke's `https://github.com/dukecld/cb-indep` repository.
semantic-outlier-removal
Code and data for SORE (ACL 2025), a semantic boilerplate remover.
quantum-molecular-encodings
Data and codes used in Boy et al. (2025) - Quantum molecular structure encoding
https://github.com/emptymalei/poster
when change the name of this repo, should check NeuPhysics/neutrino/index.rst
hybridbackend
A high-performance framework for training wide-and-deep recommender systems on heterogeneous cluster
https://github.com/emptymalei/streamlit-multipage-template
A template for streamlit apps. Multiple pages and utilities are structured.
check_ssl_cert
A shell script (that can be used as a Nagios/Icinga plugin) to check an SSL/TLS connection.
gromacs-osc
Modifications to GROMACS 2021.5 to perform MD simulations in the presence of Ultrasounds
complex-contagion-model
Repository used for my Master Thesis at Potsdam Institute for Climate Impact Research, 2024/25.
https://github.com/emptymalei/torchdyn
A PyTorch library entirely dedicated to neural differential equations, implicit models and related numerical methods
mlpro-test-center
MLPro Test Center – Howtos and benchmarking tools for MLPro components and algorithms
mosquitosimcity_4cast
Code associated with the journal article "Mechanistic Modeling of Aedes aegypti Mosquito Habitats for Climate-informed Dengue Forecasting—Can We Improve Lead Time While Retaining Predictive Skill?"
ecophysiology-of-two-mesophotic-octocorals-code-and-data
Publicly available code utilized in analyses for manuscript 'Ecophysiology of two mesophotic octocorals intended for restoration: Effects of light and temperature' (Lange et al, in review)
network_modeling
This project is my personal space to document learnings in complex systems. It's like a treasure chest filled with insights from online seminars and academic papers I've engaged with. 🎓
lujan_etal_2023_ua_osmose
Complete set of scripts used for the UA in NHCE OSMOSE model