GitHub
knime-plants
KNIME nodes to configure, run and analyze PLANTS protein-ligand docking
gist-conceal.sh
Make a gist secret by creating a new secret gist, and deleting the old one.
ssrq-retro-lab
Experiments on the application of generative AI for the retro-digitisation of printed editions
belt-tensioner-robot-servo
Sim Racing Belt Tensioner using robots hobby servos and SimHub
wglc-scripts
Scripts used to create the WWLLN Global Lightning Climatology (WGLC)
covsar
Covariance Based InSAR Time Series Extraction from an ISCE stack of SLCs using Python
snakemake_rnaseq
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
lcot-hydrogen-and-ammonia
Code for the paper "Levelised cost of transmission comparison for green hydrogen and ammonia in new-build offshore energy infrastructure: Pipelines, tankers, and HVDC"
axiom_ai
A framework for resonance-based decision-making in artificial agents, combining celestial influences, memory feedback, and symbolic emergence.
mmdet-rgbtdroneperson
Official code for "Drone-based RGBT Tiny Person Detection".
https://github.com/ivis-at-bilkent/cytoscape.js-avsdf
An implementation of the circular layout algorithm by He & Sykora
cvfpu
Parametric floating-point unit with support for standard RISC-V formats and operations as well as transprecision formats.
https://github.com/fgcz/bfabricshiny
Manage life sciences data using R and b-fabric - a WSDL/REST interface and a tool box; main focus on MS data
ocean-geophysical-remote-sensing-data-analyzer-ogda
Ocean Physical Data analyzer
QuartetNetworkGoodnessFit
julia package for phylogenetic networks analyses using 4-taxon subsets.
clamswrangler-web
Web version of CLAMS Wrangler. Built using Django and bootstrap.
dacapo
A framework for easy application of established machine learning techniques on large, multi-dimensional images.
@stdlib/random-strided-bernoulli
Fill a strided array with pseudorandom numbers drawn from a Bernoulli distribution.
fairly_random
Data and code for Fairly Random: The Effect of Winning the Toss on Winning the Match. Journal of Sports Analytics. 2023.
qc-b3db
A large benchmark dataset, Blood-Brain Barrier Database (B3DB), complied from 50 published resources.
et-ai-hybrid
Assistente de Revisões Científicas Híbrido - Resumos Inteligentes e Geração de Citações com IA.
hpxcl
This repository contains components that will support percolation via OpenCL and CUDA
spice
Photon mapping with python wrapper (Spectral Photon Interception in Controlled Environment)
arctic3d
Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
FiniteMPS
A julia package for finite MPS/MPO-based computations of ground-state, finite-temperature and dynamical properties.
https://github.com/ivis-at-bilkent/cytoscape.js-clipboard
A Cytoscape.js extension to provide copy-paste utilities
pia-mpc
Code to reproduce the paper "MPC with Publicly Identifiable Abort from Pseudorandomness and Homomorphic Encryption".
lang-tuv
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Turkana language
lang-bak
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Bashkir language
https://github.com/ivis-at-bilkent/sybvals
SyBValS: Systems Biology Validation Service
photonic_sim
This is a collection of methods for simulating 1D photonic structures
nlp4re-tools
List and classification of existing NLP4RE tools, as well as replication package for the NLP4RE tools book chapter.
veba
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
https://github.com/ivis-at-bilkent/cytosnap
A Node.js package that renders images of Cytoscape.js graphs on the server using Puppeteer
carpentrycon-skill-up-3-lesson-example
Lesson Example for Contributing on GitHub talk during CarpentryCon
https://github.com/ivis-at-bilkent/cd2sbgnml-webservice
An easily deployable small webservice to translate CellDesigner-SBGN-ML files with cd2sbgnml
oliver-mcmanamay_2025_scidata
A thematically consistent LULCC system for the conterminous United States adaptable to multiple MSD frameworks at a regional level. Using empirically derived spatial products, a series of contemporary base maps at a 30-m resolution were developed that support flexibility and interchangeability amongst multiple land classification systems.
