GitHub
ipf-sonification-pd
Three different PD scripts for real-time synthesis using the Impulse Pattern Formulation (IPF)
cnd/ddd-maker-bundle
A Symfony bundle that automates the generation of Domain-Driven Design (DDD) code artifacts, including commands, queries, handlers, controllers, API documentation, tests, and more. This bundle provides console commands to quickly scaffold DDD classes for your Symfony projects, following the CQRS (Command Query Responsibility Segregation) pattern.
phyloref
PhyloRef: A Snakemake-Based Workflow for Semi-Automated Reference Library Curation via Phylogenetic Anomaly Detection
pypackit
Cloud-Native Continuous Software Engineering Automation for Python Packages on GitHub
diffmethseq
A NextFlow pipeline to perform differential methylation analysis from bismark-aligned files
MDL Suite
MDL Suite: A language, generator and compiler for describing mazes - Published in JOSS (2020)
ExtendedRtIrtModeling
Extended Response Time Item Response Models with Polya-Gamma Sampler and Bayesian Quantile Regression.
vcf-reformatter
🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format with intelligent transcript handling.
selenium-examples-using-rust
Selenium browser automation examples using Rust programming
h3_indicators
Notebooks and documentation about computing H3 biodiversity indicators
metagenomicspipeline
shotgun metagenomics pipeline to obtain relative abundances and pathway abundances
taxonopy
A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier
hibridon
Hibridon is a program package to solve the close-coupled equations which occur in the quantum treatment of inelastic atomic and molecular collisions. Gas-phase scattering, photodissociation, collisions of atoms and/or molecules with flat surfaces, and bound states of weakly-bound complexes can be treated
visualisingattentionmapsvqa
Website where I demonstrate different methods of visualising different attention maps as evidence for Visual Question Answering
@effekt-lang/effekt
A language with lexical effect handlers and lightweight effect polymorphism
stats-strided-dsmeanpw
Calculate the arithmetic mean of a single-precision floating-point strided array using pairwise summation with extended accumulation and returning an extended precision result.
stats-strided-dsem
Calculate the standard error of the mean for a double-precision floating-point strided array.
science-impacts-industry
Science Impacts Industry: Investigating the Relationship Between Scientific Advancements and Industrial Funding
3dobjectreconstruction
3D Object Reconstruction project is a workflow that takes a set of stereo images and camera info and outputs a textured mesh (i.e., .OBJ file). The purpose is to translate physical items into the digital world in a photorealistic way
parsnips
Generate, search, and cite SWHIDs for Python code fragments like classes, functions, and expressions.
domino
A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware that an improved package, dominoSignal, is available.
eplant_plant_efp
A data visualization tool to display tissue expression data for Arabidopsis thaliana
ananta-theory
A symbolic and falsifiable cosmology exploring time emergence, coherence, and fractal intelligence.
stats-incr-nanstdev
Compute a corrected sample standard deviation incrementally, ignoring NaN values.
gutanalysistoolbox
Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.
nestedsamplers.jl
Implementations of single and multi-ellipsoid nested sampling
popglen
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.
nf-core-rnaseqdge
example nextflow pipeline with nf-core modules: RNA-seq and differential gene expression analysis
ruvpy
Reference implementation of the Relative Utility Value metric for forecast value assessment
merge_open_hospital_data
A repository to keep track of the merging of open health facility data for the afrimapr and covidza projects
scientific_research_scraper
[Python] Scraping tool for multiple databases using api's and ChromeDriver.
mrmagpie
The package provides cellular magpie related data via the madrat framework.
sus-analysis-toolkit
A web-based analysis toolkit for the System Usability Scale providing calculation, plotting, interpretation and contextualization utility.
spark-dynamic-executor-time-prediction
Neural Network Models for Predicting Execution Time with Dynamic Executor Allocation in Apache Spark.
sparseposer
Official Code for ACM Transactions on Graphics (TOG) paper "SparsePoser: Real-time Full-body Motion Reconstruction from Sparse Data"
hmm_kunitz_domain
Hidden Markov Model-based classification and structural validation of Kunitz-type protein domains. Includes sequence alignment, model training, validation on curated datasets, and structural quality assessment using PDBeFold and RMSD/Q-score analysis. Final project for the Laboratory of Bioinformatics 1 course at the University of Bologna.
bit_vector
Fast and highly tuned bit vector implementation including space efficient rank and select support having only 3.51% space overhead.
