GitHub
https://github.com/aria-systems-group/sym_quant_reactive_synth
Symbolic Regret synthesis and graph search
https://github.com/arkadiusz-jedrzejewski/norm-formation-m
Matlab scripts used to analyze an agent-based model (ABM) used to study the impact of symmetric and nonsymmetric conformity functions on decision-making processes.
https://github.com/arkokupski-wat/hypothesis-of-cyclic-black-hole-eruptions-in-higher-dimensional-geometry
Unified Cyclic Black Hole Eruption Hypothesis: Proposes that extreme densities trigger matter-antimatter conversion, powering cosmic explosions via temporary event horizon loss. Emergent gravity arises from 5D spacetime tension between matter/antimatter branes. Predicts unique gamma-ray profiles and eruption cyclicity (T ∼ M/Ṁ).
https://github.com/arkokupski-wat/hypothesis-of-emergent-gravity-from-substrate-phase
The Emergent Gravity from Substrate Phase Hypothesis Core Idea: This hypothesis proposes that spacetime and matter are not fundamental but represent different phase states of a single, underlying entity—the Substrate.
https://github.com/arkokupski-wat/big-bang-as-a-detonation-explosive-material
The core mechanism is matter-antimatter annihilation, which acts as the engine of the cosmos. However, the model posits that annihilation does more than just release energy in the form of photons; it is the primary process responsible for generating spacetime itself and endowing it with an expansive property.
https://github.com/arkokupski-wat/asymmetric-spacetime-disk
A 5D geometric model unifying dark energy and matter-antimatter asymmetry. Predicts Hubble constant H 0 ≈ 67 H 0 ≈67 km/s/Mpc without dark energy
https://github.com/arkokupski-wat/g-2-force-spacetime-adhesion-revised-model-
Revised model of G-2 force.
https://github.com/arkokupski-wat/g-2-force-spacetime-adhesion-model-revised-
G-2-Force-Spacetime-Adhesion Model (Revised). The theory introduces: New "adhesion parameter" D quantifying spacetime coupling
https://github.com/arm61/sim_vs_trad
ESI for "Assessing molecular simulation for the analysis of lipid monolayer reflectometry"
https://github.com/arya-gaj/your-phone-can-spot-fashion-v1
A lightweight yet powerful system that analyzes short-form videos in real time to identify fashion products by combining computer vision and natural language processing, all processed locally.
https://github.com/aspuru-guzik-group/da_for_polymers
Augmenting Polymer Datasets via Iterative Rearrangement
https://github.com/aspuru-guzik-group/atlas
A brain for self-driving laboratories
https://github.com/aspuru-guzik-group/artificial-design-of-organic-emitters
Code and data for "Artificial Design of Organic Emitters via a Genetic Algorithm Enhanced by a Deep Neural Network".
https://github.com/aspuru-guzik-group/kreed
Code for Reflection-Equivariant Diffusion for 3D Structure Determination from Isotopologue Rotational Spectra in Natural Abundance
https://github.com/astrazeneca/multimodal-python-course
The purpose of the code is to facilitate a comprehensive understanding of multimodal data science applications within medical domain. The code serves to support the delivery of a cutting-edge workshop designed to introduce researchers to the rapidly evolving field of multimodal data science
https://github.com/astro-informatics/s2scat
Differentiable and GPU accelerated scattering covariance statistics on the sphere
https://github.com/astromusers/darkinferno
Library for computing the temperature profile within the core of rocky planets, including the Earth, due to heating from the annihilation of captured dark matter
https://github.com/atzberg/geo_neural_op
Geometric Neural Operators (GNPs) for machine learning tasks on point-cloud representations: curvature estimation, shape deformations, solvers for geometric PDEs. Also, includes weights of pretrained transferable GNP models.
https://github.com/ay-lab/signifrt
A Quantitative Framework for the Assessment of RT Changes upon CRISPR-mediated Dissection, from Turner and Hinojosa-Gonzalez et al. (2025))
https://github.com/b-cubed-eu/invasimapr
Workflow to visualise trait dispersion and assess invasibility
https://github.com/babots-project/cuda_agent_based_sim
A simple CUDA agent-based simulator
https://github.com/bammri/3d_dynamic_paper_2024
Code and data for the 3D Dynamic paper 2024
https://github.com/bamresearch/probeye
A general framework for setting up parameter estimation problems.
https://github.com/bandframework/rose
The Reduced-Order Scattering Emulator (rose) is a user-friendly software for building efficient surrogate models for nuclear scattering
https://github.com/barahona-research-group/multiscalemobilitypatterns
Code for the paper "Multiscale mobility patterns and the restriction of human movement" by Juni Schindler, Jonathan M Clarke and Mauricio Barahona: https://arxiv.org/abs/2201.06323
https://github.com/barathme/hen_multiscale_lowk
Explainable Multiscale Modeling of High-Entropy Nitride Superlattices for Low-Thermal-Conductivity Coatings
https://github.com/barricklab/ltee-ecoli
Genomics resources for the Long-Term Evolution Experiment with E. coli
https://github.com/bartongroup/sack1g-analysis
This is a GitHub Repository containing the data and code used for an structural analysis of FAM83G and FAM83G-CK1A 3D models
https://github.com/batmen-lab/diamond
Error-controlled interaction discovery in machine learning models
https://github.com/battmodels/diffthermo_ocv_paper
diffthermo, a python package for thermodynamically consistent OCV model construction
https://github.com/battmoteam/pybamm
Fast and flexible physics-based battery models in Python
https://github.com/bbglab/oncodrive3d
A computational approach for identifying cancer driver genes by detecting three-dimensional clusters of somatic missense mutations in protein structures.
https://github.com/bbopt/rungekutta
The RUNGE-KUTTA blackbox optimization problem
https://github.com/beatlab-mcmaster/schlichting_msc_thesis
Code and data to reproduce my master's thesis.
https://github.com/bede/deacon
FASTX search and [host] depletion using minimizers
https://github.com/beefathima-git/cloud-computing-for-real-time-surveillance-applications-
This project utilizes fog and cloud computing to enable low-latency, real-time surveillance by processing video and sensor data closer to the source. It improves responsiveness, reduces bandwidth usage, and enhances system scalability for smart surveillance applications.
https://github.com/beehive-lab/tornadovm
TornadoVM: A practical and efficient heterogeneous programming framework for managed languages
https://github.com/benjamindecker/quantum-cellular-automaton
A classical simulation of quantum cellular automata
https://github.com/benjaminhlina/nichetools
Complementary functions to extract and work with objects created by {nicheROVER} and {SIBER}
https://github.com/benjaminhlina/lake-ontario-ecoregions-ms
Data and code for paper centred on trophic differences among ecoregions in Lake Ontario
https://github.com/benweare/em_scripts
Electron microscopy scripts not associated with any specific publications.
https://github.com/berenslab/disentangling-retinal-images
This repository contains the code for the paper "Disentangling representations of retinal images with generative models".
https://github.com/bhklab/signaturesets
Compendium of published molecular signatures
https://github.com/bihealth/fracture-healing-and-aging-scseq
single-cell bone healing project
https://github.com/billbrod/spatial-frequency-model
Model from the spatial frequency preferences paper
https://github.com/billbrod/foveated-metamers
Create metamers using models of the ventral stream and run experiments to validate them
https://github.com/bin-cao/tcgpr
[NPJ Com Mat 2023 | Small 2024] Machine Learning Algorithm : outlier identifying, feature selection
https://github.com/biodt/general-soilgrids-soil-data
Building block for obtaining selected soil data at given location from SoilGrids and derived data sources (Soilgrids REST API, HiHydroSoil map).
https://github.com/biodt/uc-grassland-model
grassland simulation model source code
https://github.com/bioinfomachinelearning/gate
Graph transformer for estimating protein model accuracy
https://github.com/biop/qupath-extension-cellpose
an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
https://github.com/bioscan-ml/bioscan-1m
A Step Towards Worldwide Biodiversity Assessment: The BIOSCAN-1M Insect Dataset
https://github.com/biswesh456/bargaining
This repo contains code for the paper Incorporating Autonomous Bargaining Capabilities into E-Commerce Systems which was accepted in ACM IVA 2020.
https://github.com/bitcs-information-retrieval-2021-2022/assignment-description
Description of Final Assignments of Information Retrieval Course 2021-2022
https://github.com/bluebrain/topological_sampling
The analysis pipeline for the topological sampling project
https://github.com/bluebrain/neurodamus
A BBP Simulation Control application for NEURON
https://github.com/bluebrain/psp-validation
Perform spontaneous minis validations
https://github.com/bluebrain/currentscape
Currentscape is a Python tool enabling scientists to easily plot the currents in electrical neuron models. The code is based on the paper Alonso and Marder, 2019.
https://github.com/bluebrain/astrovascpy
Vasculature blood flow computation and impact of astrocytic endfeet on vessels
https://github.com/bluebrain/atlas-enhancement
Tools to generate flatmaps of brain atlases & code to add barrel and barrel column annotations to Allen Mouse CCFv3
https://github.com/bluebrain/vessmorphovis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels) morphologies.
https://github.com/bluegreen-labs/swift_cc894
Analysis of the 19 month flight of juvenile swift CC894
https://github.com/bodenmillergroup/scpathology_publication
The Single-Cell Pathology Landscape of Breast Cancer
https://github.com/boniolp/tsadtaxonomy
This application helps users explore and understand the vast array of existing methods, ranging from traditional statistical approaches to modern machine learning algorithms. It visualizes a structured, process-centric taxonomy of anomaly detection techniques, enabling a deeper insight into the research landscape.
https://github.com/borchlab/ibex
Using BCR and expression for sequence embedding
https://github.com/brain-development-and-disorders-lab/mars
Metadatify is an open-source web-based tool to create, manage, and search scientific metadata.
https://github.com/braingeneers/sims-web
Attempt to run SIMS inference in the browser
https://github.com/bramvanroy/mantis
Segmentation interface for the TPR-DB to manually tokenize and sentence segment
https://github.com/bridgedb/wikidata2bridgedb
Creation of BridgeDb mapping databases from Wikidata
https://github.com/britishgeologicalsurvey/ash-model-plotting
Wrapper around Iris Python library for easy plotting of NAME, FALL3D and HYSPLIT model results.
https://github.com/broadinstitute/one-shot-atlas
Siamese Neural Network for anatomical registration
https://github.com/broadinstitute/str-truth-set
Genome-wide tandem repeat (TR) truth set based on the Synthetic Diploid Benchmark [Li et al. 2018]
https://github.com/broadinstitute/sma-finder
A tool for diagnosing SMA using exome, genome or targeted sequencing data