GitHub
distilabel
Distilabel is a framework for synthetic data and AI feedback for engineers who need fast, reliable and scalable pipelines based on verified research papers.
terraform-aws-secretsmanager-for-provider-secrets
A _coupled_ pattern for sourcing provider secrets from AWS SecretsManager
sharetraitdatabase
ShareTrait Database — a relational SQL database providing a structured implementation of the ShareTrait data. It includes the full schema definition, data tables and supporting documentation.
2017-10-19-universitybotswana
This is a repository for the Software Carpentry workshop that will take place from 19 - 20 October at the University of Botswana
avoiding-collinearity
Code and tests for determining an upper bound on the number of collinear points in an infinite walk on a finite set of vectors in Z^3.
pylaserpulse
A simulation toolbox for modelling laser pulse propagation through nonlinear, dispersive, active, and passive optical fibre systems in python.
stats-strided-dsnanmeanpn
Calculate the arithmetic mean of a single-precision floating-point strided array, ignoring NaN values, using a two-pass error correction algorithm with extended accumulation, and returning an extended precision result.
stats-strided-meanors
Calculate the arithmetic mean of a strided array using ordinary recursive summation.
synthnn
A Python package for estimating treatment effects using Synthetic Nearest Neighbors
2025-05-27-uw
Website for the Software Carpentry Workshop at the University of Washington on May 27–30, 2025.
mhd-2d-sphere
These Python scripts support the findings of our study, Nakashima & Yoshida (2024).
runtime-info-es
An ECMAScript (JavaScript & TypeScript) module for runtime information.
keploy
Unit, API & Integration Testing Agent for Developers. Generate tests, mocks/stubs for your APIs that actually work!
Pore2Chip
Pore2Chip: All-in-one python tool for soil microstructure analysis and micromodel design - Published in JOSS (2025)
minify-bibtex.sh
A tool to shorten author, editor, journal, and booktitle in a BibTeX file.
spinefe-benchmark
Code and instructions to reproduce the analyses from our study comparing linear and nonlinear finite element models of vertebral strength across the thoracic and lumbar spine using the VERSE19 dataset. Includes image data, results and visualization scripts to support full reproducibility.
enviroatlas_v4
EnvrioAtlas migration to JS4. Easy to use, interactive mapping application to access hundreds of maps showing environmental data
nf1_schwann_cell_morphology_signature
This repository contains all the modules to split and train a binary classification model to predict NF1 null and wildtype genotype.
vqe-ising
Implementing the quantum algorithms Variational Quantum Eigensolver (VQE) and Quantum Approximate Optimization Algorithm (QAOA) for a Vanderbilt University CS 8395 Special Topics - Intro to Quantum Computing final project.
ylac-2024-session
A slide deck on "Translating Research into Action" presented during the YLAC's Yound Researchers for Social Impact Program 2024
sns-ext
Minerva version for Seq-N-Slide pipeline (https://github.com/igordot/sns)
SSAPy - Space Situational Awareness for Python
SSAPy - Space Situational Awareness for Python - Published in JOSS (2025)
tumourevo
Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
brats
Providing top performing algorithms from the Brain Tumor Segmentation (BraTS) challenges.
asreview-dory
Official extension for ASReview LAB enabling state-of-the-art NLP models with dense embeddings and deep learning architectures. Ideal for systematic reviews where lightweight models fall short.
https://github.com/demianhj/matterport
Matterport3D is a pretty awesome dataset for RGB-D machine learning tasks :)
https://github.com/broadinstitute/regional_missense_constraint
Code to calculate regional missense constraint
org-website
This is the lab-website-template based website for the Lücken lab at the Computational Health Center at Helmholtz Munich.
inverseproblemsolvers
A collection of python codes based on numpy and numba that compute the solution to A x =b
cold-spray-macroscopic-simulator
GitHub repository of the work completed during my 6-month internship on modeling and simulating the Cold Spray process.
sciview
sciview is a tool for visualization and interaction with ND image and mesh data
Feature-augmented_Traffic_Attack_Detection_Based_on_UNSW-NB15_Dataset
Feature-augmented Traffic Attack Detection Based on UNSW-NB15 Dataset.
NonuniformFFTs
Yet another package for computing multidimensional non-uniform fast Fourier transforms (NUFFTs) in Julia
repulsor
A package for handling tangent-point energy and other nonlocal energies.
tomte
A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
anova-with-flexible-emmeans
This Shiny app performs ANOVA (Type I/II/III) and EMMEANS analyses on uploaded Excel data.
bioregion
:package: An R package compiling all steps of a bioregionalization workflow
offenses_data
Demographics and offenses of California's prison population acquired by Redo.io through public records laws
torchsom
TorchSOM is a PyTorch-based library for training Self-Organizing Maps (SOMs), a type of unsupervised learning algorithm used for clustering and dimensionality reduction. Designed for scalability and ease of use, this implementation is optimized for large-scale data.
https://github.com/demianhj/generative-models
Generative Models by Stability AI
hogpp
Fast computation of rectangular histogram of oriented gradients (R-HOG) features using integral histogram
@stdlib/random-streams-randi
Create a readable stream for generating pseudorandom numbers having integer values.