GitHub
QuartetNetworkGoodnessFit
julia package for phylogenetic networks analyses using 4-taxon subsets.
ssarp
Repo for the R Package ssarp (Species-/Speciation-Area Relationship Projector)
cc-metric-collector
A node agent for measuring, processing and forwarding node level metrics
ocean-geophysical-remote-sensing-data-analyzer-ogda
Ocean Physical Data analyzer
https://github.com/fgcz/bfabricshiny
Manage life sciences data using R and b-fabric - a WSDL/REST interface and a tool box; main focus on MS data
dpo-rlhf-paraphrase-types
Enhancing paraphrase-type generation using Direct Preference Optimization (DPO) and Reinforcement Learning from Human Feedback (RLHF), with large-scale HPC support. This project aligns model outputs to human-ranked data for robust, safety-focused NLP.
cvfpu
Parametric floating-point unit with support for standard RISC-V formats and operations as well as transprecision formats.
context-frugal-langchain
🦜️🔗 Experimental chatbot to enable longer conversations by strong context summarization and history replacement
https://github.com/ivis-at-bilkent/cytoscape.js-avsdf
An implementation of the circular layout algorithm by He & Sykora
bachelor-dissertation
Dynamische Regelung der Walzkraft beim mechanischen Festwalzen
training-resources
Resources for teaching/preparing to teach bioimage analysis
stereo_vision_core
Stereo Vision Core accelerator is a real-time stream processing architecture that calculates the disparity map of stereo images. The accelerator is available as an RTL description using VHDL, which is fully parametrizable and synthetizable for FPGA or ASIC.
equitystack
A structured repository of Python scripts and Jupyter notebooks for development sector data workflows — including public health, gender equity, women's economic empowerment (WEE), education, and MEL (Monitoring, Evaluation, and Learning). Includes plug-and-play templates, sample data, test coverage, and Colab-ready execution.
https://github.com/broadinstitute/abc-enhancer-gene-prediction
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
mmdet-rgbtdroneperson
Official code for "Drone-based RGBT Tiny Person Detection".
axiom_ai
A framework for resonance-based decision-making in artificial agents, combining celestial influences, memory feedback, and symbolic emergence.
template-academic-repo
This is our template for academic software repositories
lcot-hydrogen-and-ammonia
Code for the paper "Levelised cost of transmission comparison for green hydrogen and ammonia in new-build offshore energy infrastructure: Pipelines, tankers, and HVDC"
https://github.com/broadinstitute/gnomad_local_ancestry
Hail batch pipeline and scripts for local ancestry inference
symode
Python software for the algebraic (SymPy) and numerical (SciPy) treatment of ordinary differential equations (ODEs)
snakemake_rnaseq
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
covsar
Covariance Based InSAR Time Series Extraction from an ISCE stack of SLCs using Python
atomic_physics
Lightweight toolkit for calculations based on atomic structure.
wglc-scripts
Scripts used to create the WWLLN Global Lightning Climatology (WGLC)
pco-si-2024-1-p3-poo-tpfinal-grupo-2
pco-si-2024-1-p3-poo-tpfinal-grupo-2 created by GitHub Classroom
https://github.com/lrosenplaenter/g-cal-desktop
G-Cal Desktop is an unofficial desktop application that provides Google Calendar in its own window.
agit-2025-spanishoddata
Website for "Analysing massive open human mobility data in R using spanishoddata, duckdb and flowmaps" workshop at AGIT 2025 conference in Salzburg
daily_tseb_gee_et
A GEE TSEB Workflow for estimating Daily High Resolution (30m) fully Remote Sensing Evapotranspiration (ET)
belt-tensioner-robot-servo
Sim Racing Belt Tensioner using robots hobby servos and SimHub
philosophy-of-the-machines
Philosophy of the Machines - A Manifesto for Humans in the Age of Artificial Agents
https://github.com/broadinstitute/delphy
Fast, scalable, accurate and accessible Bayesian phylogenetics
bioscan-dataset
PyTorch torchvision-style datasets for BIOSCAN-1M and BIOSCAN-5M.
isopleuros
Ternary Plots - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/isopleuros
mstools
tool functions that can be used by several madrat-dependent or magpie4 output functions.
rdmkit
ELIXIR Research Data Management Toolkit - Find the answers to your research data management questions here.
ssrq-retro-lab
Experiments on the application of generative AI for the retro-digitisation of printed editions
multi-camera-calib
Package for calibrating synchronized multi-camera setups, designed for robotic platforms. It captures calibration data, runs ChArUco-based calibration, and validates the results with 3D backprojection.
gist-conceal.sh
Make a gist secret by creating a new secret gist, and deleting the old one.
ml-explorer
A Streamlit app to explore classification and anomaly-detection pipelines on synthetic datasets! 🧪
knime-plants
KNIME nodes to configure, run and analyze PLANTS protein-ligand docking
knime-sstea
Knime node to calculate ss-TEA score of sequence alignment and subfamily members.
fieldstack
Reusable R notebooks, scripts, and tools for applied data work and evaluation — built for use in the field across health, gender, climate, and education programs.
https://github.com/fgcz/prolfqua
Differential Expression Analysis tool box R lang package for omics data
skylight.jl
General-relativistic ray tracing and radiative transfer in arbitrary spacetimes
data-and-design-core
Code developed by the EFDC Data and Design Core team to support mental health research.
