GitHub
https://github.com/astrazeneca/topmodel
Uses simulated time-to-event data to model efficacy by prevalence-adjusted nAb titres using a time-varying Cox model.
Citizen-Voice
An inclusive, web-based, software platform for collaborative data collection that facilitates the citizen participation
https://github.com/auroradysis/kerrp2p
KerrP2P is a software designed for forward ray tracing in Kerr spacetime. It is specifically tailored to efficiently calculate multiple null geodesics between designated "source" and "observer" points, locate apparent positions of the corresponding images, and quantify their shapes.
https://github.com/awesomecosmos/aayushi-verma-cv
Aayushi Verma's Curriculum Vitae.
https://github.com/baltic-coastal-monitoring-team/geopoint
GeoPOINT – Synthetic Point Generator for Geospatial Applications
cosmoscout-vr
:milky_way: A virtual universe which lets you explore, analyze and present huge planetary datasets and large simulation data in real-time.
https://github.com/bblodfon/pdac-efs-bench2024
Feature Selection benchmark and analysis on multi-omics PDAC datasets
https://github.com/benny0323/deep-learning-based-mia-tasks
⭐[A Deep Survey] Paper List For Metal Artifact Reduction including traditional and deepl leanring based methods. ℱℯℯ𝓁 𝒻𝓇ℯℯ to contribute!
https://github.com/berenslab/llm-excess-vocab
Delving into LLM-assisted writing in biomedical publications through excess vocabulary
python-intan
Tools and demos for working with EMG data from intan using python
https://github.com/bin-cao/shapev
[JMI 2022 | Aggregate 2025] A package for searching equivalent values based on joined SHAP values
https://github.com/bio-rsg/oceancolour
Package of custom functions for remote sensing data analysis
https://github.com/bioconductor/bioconductor-training
Bioconductor teaching and education committee
https://github.com/biodataanalysisgroup/virtual-tutorial-perturbation-modelling
https://github.com/bioinfomachinelearning/multicom4
The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri - Columbia
https://github.com/biolink/resource-ingest-guide-schema
A LinkML schema for describing the scope, rationale, and modeling approach for ingesting content from a single source.
https://github.com/bioscan-ml/barcodebert
A pre-trained representation from a transformers model for inference on insect DNA barcoding data.
https://github.com/gssi/smartcitykpi-result-visualizer
KPI Visualization Component
corporate-governance-and-asset-pricing
This solves a nonlinear stochastic singular control problem related to corporate governance
https://github.com/bodenmillergroup/imcdataanalysis
R based workflow for multiplexed imaging data
https://github.com/boothgroup/vayesta
A Python package for wave function-based quantum embedding
https://github.com/bootphon/speech-map
Mean Average Precision over words or n-grams with speech features
pipeable
A domain specific language for building functionally composable steps.
https://github.com/bozenne/article-netbenefit-correction
Code and software for the article "Correcting the bias of the net benefit estimator due to right-censored observations" published in biometrical (link: https://doi.org/10.1002/bimj.202000001 ).
https://github.com/brainets/hosi_infogain
Script for "Higher-order and distributed synergistic functional interactions encode information gain in goal-directed learning"
https://github.com/brainglobe/brainglobe-template-builder
Build unbiased anatomical templates from individual images
desirna
State of the art software for RNA sequence design. The first to solve the Eterna benchmark!
math-base-special-sinf
Compute the sine of a single-precision floating-point number (in radians).
https://github.com/broadinstitute/profiling-resistance-mechanisms
Predicting pharmacodynamic responses to cancer drugs using cell morphology
https://github.com/broadinstitute/pbs-analysis
Scripts for analyzing ChIP-seq and related datatypes with binning and PBS
https://github.com/gssi/tinkerforge.acceleo.generator
Tinkerforge Acceleo Code Generator
SOFIA: A Python Library for High-Quality 2D Triangular Mesh Adaptation
SOFIA: A Python Library for High-Quality 2D Triangular Mesh Adaptation - Published in JOSS (2026)
quantum-optical-network
A quantum optical setup to classify states using multiple hidden neurons.
https://github.com/brugr9/uepluginvolumecreator
Unreal Engine Plugin: Volume Creator – Documentation
https://github.com/bueler/glacier-fe-estimate
extend the Falk technique to Stokes glacier models of surface evolution
https://github.com/cair/tsetlinmachine
Code and datasets for the Tsetlin Machine
https://github.com/caltechlibrary/2020-05-11-swc-online
May 2020 Software Carpentry Workshop
https://github.com/camilogarciabotero/biovossencoder.jl
A small Julia package to represent BioSequences as a Voss matrix
quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
drl-nav
Deep Reinforcement Learning based autonomous navigation in realistic simulation environments.
nook-iin
Programa de Tesis, determina celdas primitivas para heteroestructuras 2D multicapa
https://github.com/cdcgov/irma
IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.
pye-plus
Multi-Criteria Decision Making (MCDM) Framework for Building Energy Systems with Expedited Computation using Machine Learning (ML) Techniques
https://github.com/ceed/nekrs
Mirror of NekRS - GPU-oriented version of Nek5000. Please use the official repository, https://github.com/Nek5000/nekRS, to create issues and pull requests.
https://github.com/centre-for-humanities-computing/llm-tweet-classification
Classifying tweets with large language models with zero- and few-shot learning.
oxo-pharo
Tic-tac-toe / noughts and crosses with minimax done in Pharo Smalltalk
https://github.com/cgeoga/vecchia.jl
Vecchia approximations for Gaussian log-likelihoods
https://github.com/ch-earth/openfews
Open and Shareable Delft-FEWS configuration for connecting the Next Generation of Forecasting Tools
https://github.com/chakravala/staticvectors.jl
Statically sized tuple vectors for Julia
candela
A project developing a novel framework to enhance Large Language Model (LLM) reliability and transparency using a human-readable directive scaffold and blockchain anchoring for verifiable behaviour governance.
https://github.com/cidgoh/nf-ncov-voc
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration with VIRUS-MVP (https://github.com/cidgoh/VIRUS-MVP) which can be used to visualize the mutation profiles and functional annotations.
https://github.com/climate-service-center/dacstore
Acceptance analysis DACStorE
https://github.com/climatecompatiblegrowth/geo-x-data-prep
Spatial data preparation tools for GeoH2 users.
https://github.com/cmendl/rqcopt_hpc
HPC implementation of Riemannian quantum circuit optimization
https://github.com/coderefinery/testing
Automated testing - Preventing yourself and others from breaking your functioning code