GitHub
2025-07-01-cldt-part2-online
Collaborative Lesson Development Training Part 2: 1+2 July 2025
d2dtracker_drone_detector
A ROS package with nodes that implements drone detection using neural netowrk and depth maps.
https://github.com/ivis-at-bilkent/cytoscape.js-qtip
A Cytoscape.js extension that wraps the QTip jQuery library
adversarialrobustness.jl
An adversarial machine learning toolkit for Flux.jl neural networks
JointEnergyModels
A package for Joint Energy Models and Energy-Based Models in Julia.
tulip
Tulip is a per unit length multiconductor transmission line and in-cell parameters solver
paper-halve-cost-of-addition
Halving the cost of quantum addition (among other things)
stats-incr-nanskewness
Compute a corrected sample skewness incrementally, ignoring NaN values.
delayssatoolkit.jl
DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays
genomeqc
Compare the quality of multiple genomes, along with their annotations.
https://github.com/ivis-at-bilkent/even
even: a tool to compare, edit, and synchronously lay out two or more networks...
research_agent2
An intelligent assistant for conducting through research and analysis
aminonaut
Software to identify and analyse nullomer peptides from UniProt data
https://github.com/friendly/wordpools
Word pools used in studies of learning and memory
radarmotr
Multi-Object Tracking with Transformer Neural Networks on Range-Doppler Maps
oliver-mcmanamay_2025_scidata
A thematically consistent LULCC system for the conterminous United States adaptable to multiple MSD frameworks at a regional level. Using empirically derived spatial products, a series of contemporary base maps at a 30-m resolution were developed that support flexibility and interchangeability amongst multiple land classification systems.
molmodsim-pytraj-analysis
Lesson for Analyzing MD data with PyTRAJ on Compute Canada
genome-portal
This is the repository for the Swedish Reference Genome Portal, a service facilitating access and discovery of genome data of non-model eukaryotic species studied in Sweden
https://github.com/ivis-at-bilkent/cd2sbgnml-webservice
An easily deployable small webservice to translate CellDesigner-SBGN-ML files with cd2sbgnml
6gsmartrrm
AI/ML-powered solutions for joint sub-band allocation and power control in hyper-dense 6G In-Factory subnetworks (InF-S). Optimize spectral efficiency, mitigate interference, and adapt to dynamic environments with advanced AI techniques.
carpentrycon-skill-up-3-lesson-example
Lesson Example for Contributing on GitHub talk during CarpentryCon
multi-robot-graph-slam
Decentralized Multi-Robot Graph Simultaneous Localization and Mapping
aphra
An open-source translation agent designed to enhance the quality of text translations by leveraging large language models
https://github.com/ivis-at-bilkent/cytosnap
A Node.js package that renders images of Cytoscape.js graphs on the server using Puppeteer
veba
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
nlp4re-tools
List and classification of existing NLP4RE tools, as well as replication package for the NLP4RE tools book chapter.
exoplanet-quantum-limits
Quantum limits of exoplanet detection and localization
photonic_sim
This is a collection of methods for simulating 1D photonic structures
https://github.com/ivis-at-bilkent/sybvals
SyBValS: Systems Biology Validation Service
2022-10-24-ldev-online
Website for the October Data Carpentry for SSH workshop organized by LDEV
lang-bak
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Bashkir language
lang-tuv
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Turkana language
bpbounds-stata
Balke-Pearl nonparametric bounds for the average causal effect implemented in Stata
mrrobust
Stata package for two-sample Mendelian randomization analyses using summary data
chemconf-analysis
Combined Python/Linux scritp for conformational analysis of a xyz file containing multiple structures, based on RMSD and additional geometrical constrains
totpsaurus
Ultralight, non-dependent and minimalist open-source package for generating Time-based One-Time Passwords (TOTPs), creating OTP URLs, and generating secure backup codes for account recovery.
pia-mpc
Code to reproduce the paper "MPC with Publicly Identifiable Abort from Pseudorandomness and Homomorphic Encryption".
@isle-labs/graphmaker
GraphMaker is a tool for creating, manipulating, and exporting graphs using natural language.
https://github.com/dcardonav/dl-ibm-keras
Personal repository to store the material related to the IBM AI Professional Certificate
semanticlens
Mechanistic understanding and validation of large AI models with SemanticLens
joplin-plugin-jarvis
Joplin (note-taking) assistant running a very intelligent system (GPT, Claude, Gemini, Ollama, Hugging Face)
https://github.com/ivis-at-bilkent/cytoscape.js-clipboard
A Cytoscape.js extension to provide copy-paste utilities
def-au-asls-location
Machine-readable representation of the classifiers described in chapter 3 Location, by L.J. Gregory, R.C. McDonald and R.F. Isbell in Australian soil and land survey field handbook (3rd edn)
2025-optimization-course
Repository on semidefinite programming in quantum information for the course "Optimization methods for quantum information"
thermal-inertia-for-mars-analogs
Scripts in repository were produced as part of efforts to model thermal inertia in experiments at Mars analog sites on Earth.
FiniteMPS
A julia package for finite MPS/MPO-based computations of ground-state, finite-temperature and dynamical properties.
arctic3d
Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
spice
Photon mapping with python wrapper (Spectral Photon Interception in Controlled Environment)