GitHub
pyfhel
PYthon For Homomorphic Encryption Libraries, perform encrypted computations such as sum, mult, scalar product or matrix multiplication in Python, with NumPy compatibility. Uses SEAL/PALISADE as backends, implemented using Cython.
nagios-plugin-bash-templates
A set of templates for Nagios check scripts written in Bash.
2017-06-21-qmul
Software Carpentry workshop at Queen Mary University London 2017-06-20
https://github.com/demoriarty/minimaptrackerrv2
League of legends minimap tracker v2
api-integration
Integration with APIs for Park-Prompt and other park-pliant services.
reinforcement-learning-for-scripts-of-tribute
This is the corresponding Github repository of our paper "Training a Reinforcement Learning Agent for Tales of Tribute".
syne-tune
Large scale and asynchronous Hyperparameter and Architecture Optimization at your fingertips.
https://github.com/demoriarty/flash-attention
Fast and memory-efficient exact attention
haarpy
Haarpy is a Python library for the symbolic calculation of Weingarten functions and related averages of unitary matrices sampled uniformly at random from the Haar measure.
stats-strided-smean
Calculate the arithmetic mean of a single-precision floating-point strided array.
leafwaxtools
A package for calculating common indices from plant leaf wax distributions and isotopic data
agent-based-evolutionary-game-dynamics
NetLogo models developed in the book "Agent-Based Evolutionary Game Dynamics"
cmipsummary
A summary paper describing climate science MIP history and evolution
stats-strided-dmaxabssorted
Calculate the maximum absolute value of a sorted double-precision floating-point strided array.
hictkpy
Python bindings for hictk: read and write .cool and .hic files directly from Python
topolow
A physics-inspired R package for robust Euclidean embedding of sparse, non-metric dissimilarity data. Particularly powerful for antigenic cartography and viral evolution tracking, but applicable to any domain with incomplete similarity measurements. Published in *Bioinformatics* (2025).
paidiverpy
Create pipelines for preprocessing image data for biodiversity analysis.
color-perception-task
Perceptual decision-making tasks to examine how the opinions of others change individuals’ basic perceptual processes, i.e., whether social influence can alter perception of colors.
5gc-features
This project provides a comparative analysis of various 5G Core Network (5GC) implementations, focusing on the implemented endpoints and features for each Network Function (NF)
mapseq
This repository provides an end-to-end open source pipeline for the processing of MAPseq (Marker Assisted Programming sequencing) data.
pyfixest
Fast High-Dimensional Fixed Effects Regression in Python following fixest-syntax
msf-proyecto-final
Dinámica y Control del Eje Endocrino en el Síndrome de Cushing
archeo
Bayesian framework for inferring natal kick, ancestral masses and spins of black holes.
qc-partial-charges-amber
Step-by-step procedure for calculating partial atomic charges compatible with the AMBER General Force Field (GAFF), using quantum calculation using the GAMESS software and Antechamber using RESP fitting method.
nianetcae
Designing and constructing convolutional autoencoders using nature-inspired algorithms
lang-epo
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Esperanto language
the-professor
A modular AI persona for ethical peer review, built using the DigitalEgo and AI Cabinet frameworks.
lang-pad
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Paumarí language
lang-rmy
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Vlax Romani language
kernelinterpolation.jl
Multivariate (generalized) scattered data interpolation with symmetric (conditionally) positive definite kernel functions in arbitrary dimension
preoperative-atelectasis
This repository contains the documentation for reproducibility of the study "Preoperative atelectasis in patients with obesity undergoing bariatric surgery: a cross-sectional study".
evolver
Evolver is a tool based on the formulation of the automatic configuration and design of multi-objective metaheuristics as a multi-objective optimization problem.
p3-analysis-library
A library simplifying the collection and interpretation of P3 data.
plantcv-tutorial-tripsacum-seedhead
A tutorial for open source image analysis for phenotyping seedheads of tripsacum dactyloides
fedlabsyncncmapss
Federated Learning with Hybrid Data Partitioning using NCMAPSS datasets
pyepal
Multiobjective active learning with tunable accuracy/efficiency tradeoff and clear stopping criterion.
lambdanative-and-fdroid
Introduction to building and distributing Android applications
ultralystics-baseline
Based on the official Ultralytics repository, I've added some of my own tricks to serve as a baseline for various comparative experiments in object detection.
intro-tableau
An introductory lesson on data visualization using Tableau Public. Learners create charts, explore datasets, and build dashboards—no prior experience required.
stochasticvehiclescheduling.jl
Application of InferOpt.jl to the Stochastic Vehicle Scheduling Problem
mumu
C++ implementation of lulu, a R package for post-clustering curation of metabarcoding data
evexplorer
nf-core/evexplorer is a pipeline for analyzing RNA data from extracellular vesicles, compatible with technologies such as nextflex, comboSeq, and ONT with further support forthcoming. evexplorer handles QC, expressed region detection, library size normalization and Differential RNA Expression (DRE)
macchiato
Macchiato is a Petri Nets implementation for Python 3 with a focus of usability and scriptability.
