GitHub
INLAjoint
Joint modeling multivariate longitudinal and time-to-event outcomes with INLA
unbiased-inverse-volume-rendering
Code for the paper "Unbiased Inverse Volume Rendering with Differential Trackers"
random-seqs-ecoli
Pipeline used to analyse frequency changes of random sequences expressed in E. coli. (Fajardo Castro & Tautz, 2021)
objects-compositional-generalization
Official code for the paper "Provable Compositional Generalization for Object-Centric Learning" (ICLR 2024, oral)
collab-branching
Template for exercise on collaborating using the branch model
soma_den_mn_model
Two compartment motor neuron (MN) pool model based on (Elias and Kohn, 2013), implemented in Brian2. Every MN is comprised by a cylindrical soma and dendrite and coupled with a model of motor unit (MU) twitch for force production. The dendrites of the MNs include L-type Ca2+ channels to simulate the effect of persistent inward currents.
fitdtvarmx
Fit the discrete-time vector autoregressive model using the 'OpenMx' package.
dynamont
aip
The Attacker IP Prioritizer(AIP) dynamically generates resource-friendly IPv4 blocklists from Zeek network flows.
code-for-simulation-based-active-learning-for-systematic-reviews
Code visualization notebooks for "Simulation-Based Active Learning for Systematic Reviews: A Systematic Review of the Literature"
network_tda_tutorial
This repository is dedicated for the tutorial on network and topological neuroscience.
metagenomics
A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
python-schema-matching
A python tool using XGboost and sentence-transformers to perform schema matching task on tables.
llm_simpy_models
The SimPy models and apps generated by LLMs, deployed as a single app.
caloclouds-2
PyTorch implementation of the CaloClouds II model introduced in https://arxiv.org/abs/2309.05704
mpox-kg
Source code and data repository for paper titled "Monkeypox Knowledge Graph: A comprehensive representation embedding chemical entities and associated biology of Monkeypox "
cessda.cdc.aggregator.oai-pmh-repo-handler
Component that provides an OAI-PMH endpoint so that metadata can be harvested by other aggregators
meros
Compact Implementation of Meta - Recognition and EVT Tools for Open-Set Classification
cudamatrixtranspose
Optimizing matrix transposition on GPU with CUDA (University of Trento, Italy)
tiapli-2023-2-communibus
Trabalho Interdisciplinar: Aplicação Interativa - 2023-2 - CommuniBus
ppl-cc-ti1-2023-2-g-problemas-de-habitos-saudaveis
ti-1-ppl-cc-m-20232-problemas-de-habitos-saudaveis created by GitHub Classroom
coryphoideae_species_tree
Palm subfamily Coryhpoideae higher-level systematics
education-app-prototype
A prototype of an app to organize school assignments and classes created in Figma
adaptive_control_steerbywire
MRAC (Model Reference Adaptive Control)+ Input shaping to safely control Steer-By-Wire vehicles.
nplinker-webapp
The NPLinker web app, built with Plotly Dash, for visualizing NPLinker predictions
cudawrappers
C++ wrapper for the Nvidia/HIP C libraries (e.g. CUDA driver, nvrtc, hiprtc, cuFFT, hipFFT, etc.)
markov-approximation
A short script, demonstrating the implementation of the two scenarios and how the approximation and the runtime measurement is performed.
ncov2019-ont-nf
Nextflow pipeline to process SARS-CoV-2 genomes by Nanopore Sequencing using ARTIC (https://github.com/artic-network/fieldbioinformatics) tools
vertical-federated-logistic-regression
This is a simple implementation of Vertically Federated Logistic Regression
amof
A python package to analyze Molecular Dynamics (MD) trajectories of amorphous Metal-Organic Frameworks (MOFs).
array-base-symmetric-banded-filled2d-by
Create a filled two-dimensional symmetric banded nested array according to a provided callback function.
resourcecode
The resourcecode Marine Data Toolbox is a python package developed within the ResourceCODE project, to facilitate the access to a recently developed Metocean hindcast database, and to a set of state-of-the-art methods for data analysis. This toolbox provides developers with a set of standard functions for resource assessment and operations planning
ai-object-tracking
Exploring BoxMOT: Pluggable Modules for Advanced Tracking in Segmentation and Object Detection
pfas-homologous-series
A quick and dirty script for making a list of PFAS homologous series from processed LC-HRMS data
king-phillips-war
Jekyll site for the King Phillip's War Project @ Boston College
random-array-weibull
Create an array containing pseudorandom numbers drawn from a Weibull distribution.
researchhomeworkproblems
Homework assignments to connect basic coursework concepts to cutting-edge research
novicevsexpert
Replication package, supplementary materials, and analysis pipeline for our FSE'22 EEG study.
soilmoisture_atbd_v2
Jupyterbook for the CIMR Level-2 Soil Moisture ATBD developed in the DEVALGO project
2021-multichannel-fw
Codes for the study: Dijoux, S. and Boukal, D.S. (2021). Community structure and collapses in multichannel food webs:Role of consumer body sizes and mesohabitat productivities. Ecology Letters, 24: 1607-1618.
noise_reduction_of_ligo_data
Using simulated LIGO data this repository uses 3 very simple and quick methods to remove noise and reveal the chirps created by the simulated merger of two black holes
glycosylationstatistics
Systematic detection of sugar moieties in COCONUT using the Sugar Removal Utility
ecg_classification
Official and maintained implementation of the paper "Exploring Novel Algorithms for Atrial Fibrillation Detection by Driving Graduate Level Education in Medical Machine Learning" (ECG-DualNet) [Physiological Measurement 2022, EMBC 2023].