GitHub
au-ecoscience-2023
Seminar at Dept Ecoscience, Aarhus University, March 8th 2023
redacted-contextual-question-answering
Data for a new question answering task, along with associated code
cryptanalysis
Automated cryptanalysis of substitution permutation network cipher
mejiro
Pipeline to simulate diffraction-limited telescope images of strong gravitational lenses
near-linear-cophenetic-distance
Calculating generalized Cophenetic Distances in near-linear time under any Lp norm.
https://github.com/dmentipl/multigrain
A smoothed particle hydrodynamics algorithm for multigrain dust with separate sets of particles
https://github.com/geoscienceaustralia/dea-config
Config files for dea services
grasptools
A collection of tools for MCDHF based programs such as GRASP, developed by me
geobenchx
LLM-agents benchmark set of geospatial tasks requiring multi-step tool use; and LLM-as-Judge based evaluation framework.
https://github.com/devidw/coverimagegenerator
Generate Cover Images for your blog articles
arachne
Thread and run commands in parallel using json objects, headless or displayed in panes for monitoring and control
https://github.com/geoscienceaustralia/nhi-tsed
Extraction and analysis of weather station observations for thunderstorm events
https://github.com/devidw/cheat-sheets
A collection of school related cheat sheets
prehgt
A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT
https://github.com/geoscienceaustralia/swhaq
Severe Wind Hazard Assessment for Queensland
ndarray-vector-int8
Create a signed 8-bit integer vector (i.e., a one-dimensional ndarray).
https://github.com/devidw/obsidian-kimbie-dark
Kimbie Dark color theme for Obsidian.
https://github.com/geoscienceaustralia/dea-knowledge-hub
DEA Knowledge Hub — The Knowledge Hub brings together information about Digital Earth Australia’s products and services, allowing you to utilise our free and open-source satellite imagery archive.
proteomegenerator3
Generate proteogenomics search databases from long-read RNAseq
https://github.com/geoscienceaustralia/coregistration-software-evaluation
coregistration software evaluation
kendall
Calculate non-parametric correlation coefficient Kendall's tau, accounting for censoring (upper/lower limits).
duckbridge
Lightweight Python wrapper around the DuckDB extension, httpserver (extension developed by @quackscience)
unsupervised-multimodal-trajectory-modeling
We use EM for a mixture of state space models to perform unsupervised clustering of short trajectories.
https://github.com/devidw/tortoise-tts-fast
Fast TorToiSe inference (5x or your money back!)
essflows
MAPPING ECOSYSTEM SERVICE FLOWS IN SENEGAL: Sardinella protein flows from small scale fisheries
multi-shell-dmriharmonization
Harmonization of multi-site, multi-shell diffusion MRI
https://github.com/geoscienceaustralia/sira
Systemic Infrastructure Resilience Analysis
exosim
ExoSim 2 is the next generation of the Exoplanet Observation Simulator (ExoSim) tailored for spectro-photometric observations of transiting exoplanets from space, ground, and sub-orbital platforms. This software is a complete rewrite implemented in Python 3, embracing object-oriented design principles.
shift15m
SHIFT15M: Fashion-specific dataset for set-to-set matching with several distribution shifts
rsfc
Repository for development on the Research Software Quality Checks (RSQC) package
argo-messaging
The ARGO Messaging API is implemented as a Publish/Subscribe Service. Instead of focusing on a single Messaging API specification for handling the logic of publishing/subscribing to the broker network the API focuses on creating nodes of Publishers and Subscribers as a Service.
https://github.com/devidw/migrate-avira-passwords-to-google
Prepare Avira Password Manager CSV export for Google Passwords import
https://github.com/geoscienceaustralia/dea-sandbox
Digital Earth Australia Sandbox config and planning
amiris
Agent-based Market model for the Investigation of Renewable and Integrated energy Systems (Official GitLab Mirror)
https://github.com/kukininj/byebit
projekt portfela kryptowalut na zajęcia z Technologii Blockchain w Nauce i Technice
https://github.com/devidw/styletts2
StyleTTS 2: Towards Human-Level Text-to-Speech through Style Diffusion and Adversarial Training with Large Speech Language Models
packaging_data_with_ro-crate
Carpentries style lesson for packaging research data using RO-crate
labbook-and-timekeeping
A project to document thought process and other stuff like a lab book which also delineates a proper time table of time spent working.
physics-based-pedestrian-modeling
Python package to create physics-based pedestrian models from crowd measurements
extract_urls_mentions_hashtags
The methods extracts urls, mentions and hashtags from a piece of text
@stdlib/blas-base-cscal
Scale a single-precision complex floating-point vector by a single-precision complex floating-point constant.
soil_auxo
Repository with code & data for the publication: Obligate cross-feeding of metabolites is common in soil microbial communities
stats-strided-dsmeanwd
Calculate the arithmetic mean of a single-precision floating-point strided array using Welford's algorithm with extended accumulation and returning an extended precision result.