GitHub
loris
Loris: Database and Analysis application for a Drosophila Lab (or any lab)
PhenoFeatureFinder
PhenoFeatureFinder: a python package for linking developmental phenotypes to omics features - Published in JOSS (2024)
st4sd-olm
An Operator Lifecycle Manager (OLM) operator to automate installing and upgrading ST4SD deployments on OpenShift clusters
covid-campus-phylodynamics
Git Repo for the paper: On-Campus Dormitories as Viral Transmission Sinks: Phylodynamic Insights into Student Housing Networks During the COVID-19 Pandemic
hstrat-recomb-concept
Exploratory work to apply hereditary stratigraphy methodology to sexual populations.
biobb_wf_structure_checking
This tutorial aims to illustrate the process of checking a molecular structure before using it as an input for a Molecular Dynamics simulation using the BioExcel Building Blocks library (biobb).
bids
Template for new EEG studies in NCIL, using BIDS-compliant structure and scripts to import data.
ontology-overview-of-nfdi4cat
Repository which lists several ontologies relevant for catalysis research.
high-coverage-wgs-deepvariant-genotyping-pipeline
High Coverage WGS DeepVariant Genotyping Pipeline from UCSD Palmer Lab
microbial-richness-troposphere
Accompanying code for the manuscript "Microbial species richness in tropospheric samples above the planetary boundary layer confirms hundreds of Km long-distance transport of potential human pathogens"
rfkindianacamp
Final project documenting RFK's 1968 presidential campaign in Indiana
pco-si-2024-1-tiaw-blood-on
pco-si-2024-1-tiaw-blood-on created by GitHub Classroom
groundcalc
MATLAB toolbox designed for analysis of grounding grids (grounding impedance, GPR, leakage currents, touch voltage, step voltage distributions. and safe limits).
broadway-edft
Broadway code for implementing ensemble DFT and mathematically similar theories
cfkg
Data cleaning steps and mappings used to transform data from different sources to RDF
trycycler
A tool for generating consensus long-read assemblies for bacterial genomes
mri_k-space-derived_details_edges
k-space based details/edges detection in MRI images with optional k-space based denoising and detail control (on the example of Agilent FID data). (Python 3)
rbs_application_level_implementation
Implementation of Replication-Based Scheduling (RBS) on the application level in a form of a library written in c.
GOBLIN Lite
GOBLIN Lite: A National Land Balance Model for Assessment of Climate Mitigation Pathways for Ireland. - Published in JOSS (2024)
towards-personalized-neural-networks-for-epileptic-seizure-prediction
Supporting materials - paper - "Towards Personalized Neural Networks for Epileptic Seizure Prediction"
codesparks-framework
The CodeSparks framework aims to facilitate the integration of software analysis tools into the IDE such that their results are shown as glyph-based visualizations in the source code.
fooof-modified
This is the FOOOF (specparam) python package. An additional mode "knee_expo" was implemented. This mode adds to the function of the knee mode an exponent that corrects the fitting in higher frequencies.
st4sd-runtime-k8s
Kubernetes operator for instantiating ST4SD virtual experiments on K8s.
cactool
An easy way to collaboratively code social media posts for manual content and discourse analysis
sr-tod
This is the official code for the paper Visible and Clear: Finding Tiny Objects in Difference Map.
tunnrl_tbm_maintenance
Working repository for the code of the TunnRL TBM project
benford_russian_income_surveys
This is the code and data to replicate the analysis in Skougarevskiy (2023)'s "Russian Household Income Surveys: Ensuring Data Quality" paper.
peptidesim
Automated peptide simulation tool with gromacs, gromacswrapper, plumed
chips
Open source code to unveil the Complete History of Interaction-Powered Supernovae
sorotokicode
SOROTOKI is an open-source MATLAB package that includes an array of tools for design, modeling, and control of soft robotic systems 🐙 🤖
signalslite
A small library to efficiently store and process global equity data, especially for Numerai's Signals tournament (WIP)
labour_function_sudam
Base de datos sobre ocupaciones y funciones económicas en Latinoamérica | Database on Occupations and Economic Functions in Latin America
fnirs_decodingspatialattention
Codes for Decoding Attended Spatial Location during Complex Scene Analysis with fNIRS.
antibodyfvtm50predictor
MRes project - Predicting the melting temperature of antibodies using machine learning techniques.
ti-1-pmg-cc-m-20231-tiaw-questoes-sobre-educacao-1
ti-1-pmg-cc-m-20231-tiaw-questoes-sobre-educacao-1 created by GitHub Classroom
trainar
An interaction concept & visual scripting-based authoring tool for procedural Mobile (Android & iOS) Augmented Reality trainings.
check_my_code
Because we all need pointers when it comes to make our code better.
agtc
Agronomic experiments data Template Creator is a set of functions written in python that allow you to create custom templates to collect data for most of the typical agronomic experiments.
psg-ads-2024-1-p2-tiapn-7358-1-01-afiados-estilosos
psg-ads-2024-1-p2-tiapn-7358-1-01-equipe-4 created by GitHub Classroom
u_mo_pfaeh_moose
MOOSE-based codes and inputs to evaluate effective elastic constants of U10Mo with various porosity distributions
