GitHub
https://github.com/bluebrain/neurodamus
A BBP Simulation Control application for NEURON
https://github.com/bluebrain/psp-validation
Perform spontaneous minis validations
https://github.com/bluebrain/currentscape
Currentscape is a Python tool enabling scientists to easily plot the currents in electrical neuron models. The code is based on the paper Alonso and Marder, 2019.
https://github.com/bluebrain/astrovascpy
Vasculature blood flow computation and impact of astrocytic endfeet on vessels
https://github.com/bluebrain/atlas-enhancement
Tools to generate flatmaps of brain atlases & code to add barrel and barrel column annotations to Allen Mouse CCFv3
https://github.com/bluebrain/vessmorphovis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels) morphologies.
https://github.com/bluegreen-labs/swift_cc894
Analysis of the 19 month flight of juvenile swift CC894
https://github.com/bodenmillergroup/scpathology_publication
The Single-Cell Pathology Landscape of Breast Cancer
https://github.com/boniolp/tsadtaxonomy
This application helps users explore and understand the vast array of existing methods, ranging from traditional statistical approaches to modern machine learning algorithms. It visualizes a structured, process-centric taxonomy of anomaly detection techniques, enabling a deeper insight into the research landscape.
https://github.com/borchlab/ibex
Using BCR and expression for sequence embedding
https://github.com/brain-development-and-disorders-lab/mars
Metadatify is an open-source web-based tool to create, manage, and search scientific metadata.
https://github.com/braingeneers/sims-web
Attempt to run SIMS inference in the browser
https://github.com/fermi-ad/5g-network-qos
Software for testing quality of service metrics for 5G wireless communication.
https://github.com/fermi-ad/acorn-api-arch-meetings
Meeting notes for the API Architecture Working Group
https://github.com/fermo-metabolomics/fermo
Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
https://github.com/fermo-metabolomics/.github
Metadata for FERMO Metabolomics Organization
https://github.com/fermo-metabolomics/fermo_ms
Contains data generated in the scope of the FERMO manuscript
https://github.com/fernandez-lab-wsu/geocovid-slides
Slides to introduce the project GeoCovid
https://github.com/haydensiebers/walkability-kalamazoo-dallas
I practice data analysis by comparing Walkability in Kalamazoo and Dallas County using python and ArcGis
https://github.com/haydensiebers/shadertoyprojects
Compute Shader GLSL Projects using Shader Toy
https://github.com/fernandezfran/dbfit
Evaluation of the predictions of non-interacting model fitting when fitted with data that takes into account ion interactions
https://github.com/haydensiebers/soccer-passing-network-analysis
Learning data visualization and network analysis tools through analyzing passing in professional soccer
https://github.com/fernandezfran/bmxfc
:bar_chart::bulb: Datasets, pipelines and predictions of a metric for benchmarking an extreme fast-charging of Li-ion battery electrode materials
https://github.com/haydensiebers/gravity-simulation
My attempt at coding a gravity simulator to learn JavaScript Canvas and TypeScript
https://github.com/haydensiebers/differentialequationsclass
Projects for ODE class
https://github.com/fernandezfran/lithiation_protocol
Lithiation of amorphous silicon protocol
https://github.com/hayderkharrufa/tts-arabic-pytorch
TTS models for Arabic (Tacotron2, FastPitch)
https://github.com/fernandezfran/metcomp
Resolución de ejercicios de la especialidad Métodos Computacionales usando librerías de Python (cusro de la Licenciatura en Química de la UNC)
https://github.com/fernandezfran/cluster-connections
A clustering algorithm that classifies second nearest neighbor atom pairs based on the number of interconnecting first neighbors.
https://github.com/hayekr/1d_pot_tmm
A tool to calculate the lowest energy solution and plot the wave function for a multi-level constant potential using 1D Schro. TMM
https://github.com/fernando-aristizabal/pygeoogc
A part of HyRiver software stack for accessing ArcGIS RESTful-, WFS-, and WMS-based web services.
https://github.com/fernando-aristizabal/inundation-mapping
Flood inundation mapping and evaluation software configured to work with U.S. National Water Model.
https://github.com/fernando-aristizabal/hyriver-examples
Example Notebooks for HyRiver software stack
https://github.com/jcallinan/applepicker2024
Example of ApplePicker from Jeremy Gibson Bond's Book on Video Game Programming
https://github.com/jcallinan/oopstackexample2024
An example of OOP and data structures using Node.js and MongoDB with a React front-end.
https://github.com/jcallinan/oopstackexample
Stack example using MongoDB, Node.js and React.
https://github.com/jcbayley/antikythera_holecount
count the number of holes in the scans of the antikythera mechanism
https://github.com/hazboun6/pulsar_timing_school
Learning material for pulsar timing data analysis
niarules
Numerical Association Rule Mining using Population-Based Nature-Inspired Algorithms
https://github.com/hazboun6/pta_forecasts
Various codes used to forecast the sensitivities of PTAs.
https://github.com/fernphy/ferncal
A database of fossils for molecular dating of the fern tree of life
https://github.com/hazboun6/mdc2
A repository of the IPTA Mock Data Challenge datasets.
https://github.com/fernphy/ftol_ms
Code to generate the manuscript "An open and continuously updated fern tree of life (FTOL)"
https://github.com/feroz1gul/ned-project
streamlit, FastAPI, Kafka, Kong, Containers with Docker file and compose file
https://github.com/ferreiraas/ciencia-com-r-consultoria
Ciência com R é direcionado a pesquisadores e alunos de todos os níveis de graduação e pós-graduação da Área de Saúde.
opensoundscape
Open source, scalable software for the analysis of bioacoustic recordings
https://github.com/hazboun6/enterprise
ENTERPRISE (Enhanced Numerical Toolbox Enabling a Robust PulsaR Inference SuitE) is a pulsar timing analysis code, aimed at noise analysis, gravitational-wave searches, and timing model analysis.
PSD: Parallel Finite Element Solver for Continuum Dynamics
PSD: Parallel Finite Element Solver for Continuum Dynamics - Published in JOSS (2026)
pyhctsa: A Python package for highly comparative time-series analysis
pyhctsa: A Python package for highly comparative time-series analysis - Published in JOSS (2026)
https://github.com/ferrite-fem/ferriteinterfaceelements.jl
Interface elements (aka cohesive elements) for Ferrite.jl
https://github.com/fertiglab/spatial_venous_invasion_pdac
Spatial profiling of venous invasion in human pancreatic ductal adenocarcinoma
https://github.com/fertiglab/cogaps
Bayesian MCMC matrix factorization algorithm
https://github.com/hbclab/restingstate
Scripts to preprocess resting state data and extract ROI-ROI correlations and voxel-wise ROI seedmaps
https://github.com/fertiglab/j1798_trial_paper
scripts for the J1798 trial paper
https://github.com/hbclab/jumpstartlearning
Various Resources if you want to learn/work on various projects in the Lab
https://github.com/fertiglab/bayestme
BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data
https://github.com/hbclab/projectacuteexercise-cognitivecontrol
Data and related summaries and analyses from acute exercise project comparing effects on two cognitive control tasks.
https://github.com/hbclab/repositorylearning
Example repository towards learning/working with git