GitHub
phageannotator
Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.
phenomenal
Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping
pse
Guaranteed Structured Output from any Language Model via Hierarchical State Machines
issd-wcdi-ethiopia
Analysis of on-farm testing data generated by WCDI and ISSD in Ethiopia
scdownstream
A single cell transcriptomics pipeline for QC, integration and making the data presentable
phynteny
Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
sde-ss
This repository contains the library SDE-SS made mainly to compute trajectories of systems of SDEs. Moreover, useful related functions are also integrated.
hydrobot
Toolkit for controlling, aggregating, and synthesising flow response data. Developed in the Murray–Darling Water and Environment Research Program
compact-dictionaries
📚 Compact dictionaries in English that automatically update weekly
solar-mach
The Solar MAgnetic Connection Haus (Solar-MACH) tool is a multi-spacecraft longitudinal configuration plotter
ebola-maxent-ecological-niche-modeling-uganda
Environmental niche modeling of ebolavirus occurrence in Uganda using MaxEnt, incorporating climate, vegetation, elevation, and human settlement predictors to identify high‐risk spillover zones.
icydwarf
Coupled geophysical-geochemical-orbital evolution model of icy worlds.
flexitex-example
This repository demonstrates collaborative workflows for LaTeX projects using FlexiTeX
erfc
Emoji‑based substitution + transposition cipher for secure, fun encryption.
dseco
The DSecO project is a data model for representing and reasoning on Domain Name System (DNS) data. The ontology is developed using web technologies (e.g. RDF, OWL, SKOS) and is intended as a structure for realizing a DNS Knowledge Graph (KG) for administration and security assessment applications.
lpdm_framework
A Linear Partitioning Diversity Metric for Evaluation of Permutation-based Metaheuristic Algorithms
colab-autorun-and-connect
▶️ Automatically connect, reconnect and optionally run the first cell of notebooks in Google Colab
createpanelrefs
Generate Panel of Normals, models or other similar references from lots of samples
rwkv-depth-recurrence
A implementation of RWKV models with depth recurrence (crosslayer-param sharing)
ndarray-vector-uint16
Create an unsigned 16-bit integer vector (i.e., a one-dimensional ndarray).
teachbook_integration
This book is made for testing the editing plugin's github integration functionalities
stats-strided-dnanvariancech
Calculate the variance of a double-precision floating-point strided array ignoring NaN values and using a one-pass trial mean algorithm.
simpleharvest
a (very) simple spatially explicit forest harvest module to interface with LandR
nf-core-ameta
An nf-core compliant version of aMeta; An ancient metagenomic profiling Snakemake workflow
variantcalling
Nextflow DSL2 pipeline to call variants on long read alignment.
spatiomic
A Python package for unsupervised analysis of spatial (prote)omics data.
stats-strided-dnanstdevtk
Calculate the standard deviation of a double-precision floating-point strided array ignoring NaN values and using a one-pass textbook algorithm.
Nexarag: Democratizing Reproducible Knowledge Graph Contexts for LLM Research
Nexarag: Democratizing Reproducible Knowledge Graph Contexts for LLM Research - Published in JOSS (2026)
https://github.com/lymdlut/pix2seq
Pix2Seq - A general framework for turning RGB pixels into semantically meaningful sequences
https://github.com/jboynyc/shifterator
Interpretable data visualizations for understanding how texts differ at the word level
graflo
A framework for transforming tabular (CSV, SQL) and hierarchical data (JSON, XML) into property graphs and ingesting them into graph databases (ArangoDB, Neo4j)
scalarstack
A harmonic symbolic framework for scalar geometry, recursive physics, and quantum emergence.
therepy
data mining+ optimizer: discretize the ranges, active learning to find best ranges
