https://github.com/alleninstitute/biofile-finder
An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
12 of 15 committers (80.0%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (6.2%) to scientific vocabulary
Keywords from Contributors
transformers
interactive
archival
projection
sequences
observability
autograding
hacking
shellcodes
modular
Last synced: 10 months ago
·
JSON representation
Repository
An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
Basic Info
- Host: GitHub
- Owner: AllenInstitute
- License: bsd-3-clause
- Language: TypeScript
- Default Branch: main
- Homepage: https://biofile-finder.allencell.org/
- Size: 31.2 MB
Statistics
- Stars: 15
- Watchers: 8
- Forks: 3
- Open Issues: 73
- Releases: 71
Created over 6 years ago
· Last pushed 10 months ago
Metadata Files
Readme
Contributing
License
Codeowners
README.md
BioFile Finder
BioFile Finder is an application produced by the Allen Institute for Cell Science designed to simplify access and exploration of data, provide an intuitive mechanism for organizing that data, and provide simple hooks for incorporating that data into both programmatic and non-programmatic workflows.
Homepage
https://biofile-finder.allencell.org/
Developer documentation
Owner
- Name: Allen Institute
- Login: AllenInstitute
- Kind: organization
- Location: Seattle, WA
- Website: https://alleninstitute.org
- Repositories: 184
- Profile: https://github.com/AllenInstitute
Please visit http://alleninstitute.github.io/ for more information.
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Gabe Medrash | g****e@a****g | 1,090 |
| seanm | s****m@a****g | 887 |
| Anya Wallace | a****e@a****g | 186 |
| Brian Whitney | b****y@a****g | 178 |
| jenkins | j****s@a****g | 68 |
| tylerf | t****f@a****g | 31 |
| Philip Garrison | p****n@a****g | 30 |
| yrkim98 | y****8@u****u | 15 |
| Maria Saladovnikova | m****a@a****g | 8 |
| greg.moynihan | g****n@a****g | 7 |
| Na Hyung Choi | s****h@g****m | 7 |
| William Moore | w****e@d****k | 6 |
| Jackson Brown | j****n@g****m | 5 |
| dependabot[bot] | 4****] | 4 |
| Matte Bailey | m****b@a****g | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 206
- Total pull requests: 262
- Average time to close issues: about 1 month
- Average time to close pull requests: 19 days
- Total issue authors: 17
- Total pull request authors: 14
- Average comments per issue: 0.51
- Average comments per pull request: 0.64
- Merged pull requests: 162
- Bot issues: 0
- Bot pull requests: 31
Past Year
- Issues: 164
- Pull requests: 181
- Average time to close issues: 22 days
- Average time to close pull requests: 6 days
- Issue authors: 17
- Pull request authors: 11
- Average comments per issue: 0.43
- Average comments per pull request: 0.55
- Merged pull requests: 118
- Bot issues: 0
- Bot pull requests: 10
Top Authors
Issue Authors
- SeanLeRoy (69)
- aswallace (37)
- BrianWhitneyAI (26)
- lynwilhelm (25)
- pgarrison (21)
- toloudis (10)
- will-moore (4)
- kmitcham (2)
- krokicki (2)
- meganrm (2)
- tyler-foster (2)
- cfrick13 (1)
- vianamp (1)
- saeliddp (1)
- hughes036 (1)
Pull Request Authors
- SeanLeRoy (81)
- aswallace (73)
- BrianWhitneyAI (45)
- dependabot[bot] (31)
- will-moore (8)
- pgarrison (6)
- tyler-foster (6)
- imashmash (3)
- GabeMedrash (3)
- krokicki (2)
- frasercl (1)
- lynwilhelm (1)
- yrkim98 (1)
- ShrimpCryptid (1)
Top Labels
Issue Labels
bug (30)
enhancement (29)
UX (18)
on-prem cache (9)
AIBS (4)
documentation (4)
Performance (2)
dependencies (1)
Pull Request Labels
dependencies (32)
javascript (6)
bug (2)
UX (2)
enhancement (1)
on-prem cache (1)
Dependencies
package-lock.json
npm
- 1254 dependencies
package.json
npm
- @babel/cli 7.x development
- @babel/core 7.x development
- @babel/plugin-proposal-class-properties 7.x development
- @babel/plugin-proposal-optional-chaining 7.x development
- @babel/preset-env 7.x development
- @babel/preset-react 7.x development
- @babel/preset-typescript 7.x development
- @babel/register 7.x development
- @testing-library/react 12.x development
- @types/chai 4.2.x development
- @types/classnames 2.2.x development
- @types/debounce-promise 3.1.x development
- @types/enzyme 3.10.x development
- @types/jsdom 16.x development
- @types/lodash 4.14.x development
- @types/lru-cache 5.1.x development
- @types/mocha 9.x development
- @types/react 17.x development
- @types/react-beautiful-dnd 13.1.x development
- @types/react-dom 17.x development
- @types/react-redux 7.x development
- @types/react-syntax-highlighter 13.5.x development
- @types/react-window 1.8.x development
- @types/react-window-infinite-loader 1.0.x development
- @types/sinon 10.x development
- @types/string-natural-compare 3.0.x development
- @typescript-eslint/eslint-plugin 5.x development
- @typescript-eslint/parser 5.x development
- chai 4.2.x development
- css-modules-require-hook 4.2.x development
- eslint 8.x development
- eslint-config-prettier 8.x development
- eslint-plugin-react 7.x development
- eslint-plugin-react-hooks 4.x development
- husky 3.1.0 development
- jsdom 19.x development
- lint-staged 10.4.x development
- mocha 9.x development
- mock-raf 1.0.x development
- npm-run-all 4.1.x development
- prettier 2.1.x development
- resize-observer 1.0.x development
- rimraf 3.0.x development
- sinon 12.x development
- typescript 4.x development
- @aics/frontend-insights 0.2.x
- @aics/redux-utils 0.6.0
- @fluentui/react 8.67.x
- @tippyjs/react 4.2.x
- axios 0.21.x
- classnames 2.2.x
- cockatiel 2.0.x
- debounce-promise 3.1.x
- filesize 5.0.x
- fuse.js 3.4.x
- interactjs 1.6.x
- lodash 4.17.x
- lru-cache 5.1.x
- normalize.css 8.0.x
- react 17.x
- react-beautiful-dnd 13.1.x
- react-dom 17.x
- react-redux 7.x
- react-syntax-highlighter 15.3.x
- react-window 1.8.x
- react-window-infinite-loader 1.0.x
- redux 4.0.x
- redux-logic 3.x
- reselect 4.0.x
- string-natural-compare 3.0.x
packages/desktop/package.json
npm
- @types/electron-devtools-installer 2.2.x development
- @types/semver 7.3.x development
- babel-loader 8.2.x development
- clean-webpack-plugin 4.x development
- css-loader 6.x development
- dotenv-webpack 7.x development
- electron 16.0.x development
- electron-builder 22.14.x development
- electron-mocha 11.0.x development
- fork-ts-checker-webpack-plugin 6.x development
- html-webpack-plugin 5.x development
- mini-css-extract-plugin 2.x development
- nock 13.0.x development
- null-loader 4.0.x development
- postcss-loader 6.x development
- postcss-preset-env 7.x development
- webpack 5.x development
- webpack-bundle-analyzer 4.x development
- webpack-cli 4.x development
- webpack-dev-server 4.x development
- xvfb-maybe 0.2.x development
- @aics/frontend-insights 0.2.x
- @aics/frontend-insights-plugin-amplitude-node 0.2.x
- electron-devtools-installer 3.1.x
- electron-store 8.0.x
- regenerator-runtime 0.13.x
- semver 7.3.x
packages/web/package.json
npm
- babel-loader 8.2.x development
- clean-webpack-plugin 4.x development
- css-loader 6.x development
- dotenv-webpack 7.x development
- fork-ts-checker-webpack-plugin 6.x development
- html-webpack-plugin 5.x development
- mini-css-extract-plugin 2.x development
- postcss-loader 6.x development
- postcss-preset-env 7.x development
- webpack 5.x development
- webpack-bundle-analyzer 4.x development
- webpack-cli 4.x development
- webpack-dev-server 4.x development
- regenerator-runtime 0.13.x
.github/workflows/integration.yml
actions
- AllenCellSoftware/action-electron-builder fms-file-explorer composite
- actions/checkout master composite
- actions/setup-node master composite
.github/workflows/release.yml
actions
- AllenCellSoftware/action-electron-builder fms-file-explorer composite
- actions/checkout main composite
- actions/setup-node main composite
Dockerfile
docker
- docker-virtual.artifactory.corp.alleninstitute.org/ubuntu 20.04 build