simulatedmicroscopy

Python package to create synthetic (fluorescence) microscopy images of (nano)particles and convolution with a point spread function

https://github.com/rhoitink/simulatedmicroscopy

Science Score: 67.0%

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CITATION.cff file
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.zenodo.json file
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DOI references
Found 3 DOI reference(s) in README
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Academic publication links
Links to: zenodo.org
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Scientific vocabulary similarity
Low similarity (8.8%) to scientific vocabulary

Keywords

microscopy point-spread-function simulation

Last synced: 6 months ago · JSON representation ·

Repository

Python package to create synthetic (fluorescence) microscopy images of (nano)particles and convolution with a point spread function

Basic Info

Host: GitHub
Owner: rhoitink
License: mit
Language: Python
Default Branch: main
Homepage: https://rhoitink.github.io/simulatedmicroscopy/
Size: 1.36 MB

Statistics

Stars: 0
Watchers: 2
Forks: 0
Open Issues: 0
Releases: 16

Topics

microscopy point-spread-function simulation

Created about 3 years ago · Last pushed almost 2 years ago

Metadata Files

Readme Contributing License Citation

README.md

Simulated Microscopy

Python code to simulate 3D microscopy data based on particle coordinates.

Written by Roy Hoitink (L.D.Hoitink@uu.nl)

Installation

bash python -m pip install git+https://github.com/rhoitink/simulatedmicroscopy

For more details, look at the installation file

Documentation

Available in at rhoitink.github.io/simulatedmicroscopy/. There you can also find an example script.

Owner

Name: Roy Hoitink
Login: rhoitink
Kind: user
Location: The Netherlands
Company: @UtrechtUniversity

Website: https://uu.nl/staff/LDHoitink
Repositories: 1
Profile: https://github.com/rhoitink

PhD Candidate in Experimental Physics at @UtrechtUniversity (NL)

Citation (CITATION.cff)

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: >-
  Simulated Microscopy: A Python Package for Simulation of
  Confocal Microscopy Data based on Particle Coordinates
message: 'If you use this software, please cite using the Zenodo DOI.'
type: software
authors:
  - given-names: Leroy Daniël
    family-names: Hoitink
    email: L.D.Hoitink@uu.nl
    affiliation: >-
      Soft Condensed Matter & Biophysics, Debye Institute
      for Nanomaterials Science, Utrecht University
    orcid: 'https://orcid.org/0000-0002-3470-0078'
identifiers:
  - type: doi
    value: 10.5281/zenodo.10678180
    description: Zenodo
repository-code: 'https://github.com/rhoitink/simulatedmicroscopy'
url: 'https://rhoitink.github.io/simulatedmicroscopy/'
abstract: >-
  Python package to create synthetic (fluorescence)
  microscopy images of (nano)particles and convolution with
  a point spread function
keywords:
  - fluorescence microscopy
  - synthetic images
  - confocal microscopy
  - point spread function
  - image generation
license: MIT
version: v1.6.1
date-released: '2024-02-19'

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