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Open Source Science

https://github.com/arjunrajlaboratory/imageanalysisproject

https://github.com/arjunrajlaboratory/imageanalysisproject

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Unable to calculate vocabulary similarity
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: arjunrajlaboratory
  • Language: Python
  • Default Branch: master
  • Size: 772 KB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created over 4 years ago · Last pushed 11 months ago

Owner

  • Name: Arjun Raj's systems biology lab
  • Login: arjunrajlaboratory
  • Kind: organization

GitHub Events

Total
  • Push event: 135
  • Pull request event: 139
  • Create event: 65
Last Year
  • Push event: 135
  • Pull request event: 139
  • Create event: 65

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 1
  • Total pull requests: 129
  • Average time to close issues: less than a minute
  • Average time to close pull requests: 1 day
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.01
  • Merged pull requests: 121
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 115
  • Average time to close issues: less than a minute
  • Average time to close pull requests: about 7 hours
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.01
  • Merged pull requests: 107
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • arjunrajlab (1)
Pull Request Authors
  • arjunrajlab (168)
  • bruyeret (4)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

workers/annotations/cellori_segmentation/Dockerfile docker
  • base latest build
  • nvidia/cuda 11.8.0-cudnn8-devel-ubuntu22.04 build
workers/annotations/cellpose/Dockerfile docker
  • base latest build
  • nvidia/cuda 11.8.0-cudnn8-devel-ubuntu22.04 build
workers/annotations/deepcell/Dockerfile docker
  • base latest build
  • nvidia/cuda 11.8.0-cudnn8-devel-ubuntu22.04 build
workers/properties/blobs/blob_point_count_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/properties/connections/children_count_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/properties/points/point_circle_intensity_mean_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/properties/points/point_intensity_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/properties/points/point_threshold_intensity_mean_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/test_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/annotations/annulus_generator_M1/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/annotations/connect_sequential/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/annotations/connect_to_nearest/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/annotations/random_point/Dockerfile docker
  • $BASE_IMAGE latest build
workers/annotations/random_point_annotation_M1/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/annotations/random_square/Dockerfile docker
  • $BASE_IMAGE latest build
workers/annotations/test_multiple_annotation/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/annotations/test_multiple_annotation_M1/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/base_docker_images/base_M1_image/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/base_docker_images/base_image/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/base_docker_images/base_x86_image/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/base_docker_images/test_image/Dockerfile docker
  • ubuntu 20.04 build
workers/properties/blobs/blob_annulus_intensity_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/properties/blobs/blob_intensity_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/properties/blobs/blob_metrics_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/properties/blobs/blob_point_count_3D_projection_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/properties/lines/line_length_worker/Dockerfile docker
  • $BASE_IMAGE latest build
workers/properties/points/point_to_nearest_connected_point_distance/Dockerfile docker
  • $BASE_IMAGE latest build
workers/properties/points/point_to_nearest_point_distance/Dockerfile docker
  • $BASE_IMAGE latest build
annotation_utilities/requirements.txt pypi
  • girder-client *
annotation_utilities/setup.py pypi
  • numba *
  • numpy *
  • shapely *
workers/properties/connections/parent_child_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/properties/points/point_metrics_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
worker_client/pyproject.toml pypi
  • numpy *
  • shapely *
workers/properties/points/point_circle_intensity_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/properties/blobs/blob_annulus_intensity_percentile_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/properties/blobs/blob_intensity_percentile_worker/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/annotations/annulus_generator_M1/environment.yml conda
  • imageio
  • pip
  • python
  • scikit-image
  • shapely
workers/annotations/connect_sequential/environment.yml conda
  • geopandas
  • numpy
  • pandas
  • pip
  • python 3.9.*
  • scipy
  • shapely
workers/annotations/connect_to_nearest/environment.yml conda
  • geopandas
  • numpy
  • pandas
  • pip
  • python 3.9.*
  • scipy
  • shapely
workers/annotations/random_point/environment.yml conda
  • imageio
  • pip
  • python 3.10.*
  • scikit-image
  • shapely
workers/annotations/random_point_annotation_M1/environment.yml conda
  • imageio
  • pip
  • python
  • scikit-image
  • shapely
workers/annotations/random_square/environment.yml conda
  • imageio
  • pip
  • python 3.10.*
  • scikit-image
  • shapely
workers/annotations/test_multiple_annotation/environment.yml conda
  • imageio
  • pip
  • python
  • scikit-image
  • shapely
workers/annotations/test_multiple_annotation_M1/environment.yml conda
  • imageio
  • pip
  • python
  • scikit-image
  • shapely
workers/base_docker_images/base_M1_image/environment.yml conda
  • chardet
  • imageio
  • numba
  • numpy 1.24.*
  • pip
  • python 3.10.*
  • rtree
  • shapely
workers/base_docker_images/base_x86_image/environment.yml conda
  • chardet
  • imageio
  • numba
  • numpy 1.24.*
  • pip
  • python 3.10.*
  • rtree
  • shapely
workers/properties/blobs/blob_annulus_intensity_worker/environment.yml conda
  • imageio
  • opencv
  • pip
  • python 3.11.*
  • scikit-image
  • shapely
workers/properties/blobs/blob_intensity_worker/environment.yml conda
  • imageio
  • opencv
  • pip
  • python 3.11.*
  • scikit-image
  • shapely
workers/properties/blobs/blob_metrics_worker/environment.yml conda
  • imageio
  • opencv
  • pip
  • python 3.11.*
  • shapely
workers/properties/blobs/blob_point_count_3D_projection_worker/environment.yml conda
  • imageio
  • numba
  • pip
  • python
  • rtree
  • shapely
workers/properties/blobs/blob_point_count_worker/environment.yml conda
  • imageio
  • numba
  • pip
  • python 3.10.*
workers/properties/connections/children_count_worker/environment.yml conda
  • numpy
  • pip
  • python
workers/properties/connections/parent_child_worker/environment.yml conda
  • pip
  • python 3.11.*
workers/properties/lines/line_length_worker/environment.yml conda
  • imageio
  • opencv
  • pip
  • python
  • shapely
workers/properties/points/point_circle_intensity_mean_worker/environment.yml conda
  • imageio
  • pip
  • python
  • scikit-image
workers/properties/points/point_circle_intensity_worker/environment.yml conda
  • imageio
  • pip
  • python
  • scikit-image
workers/properties/points/point_intensity_worker/environment.yml conda
  • imageio
  • pip
  • python
workers/properties/points/point_metrics_worker/environment.yml conda
  • imageio
  • opencv
  • pip
  • python 3.11.*
  • shapely
workers/properties/points/point_threshold_intensity_mean_worker/environment.yml conda
  • imageio
  • pip
  • python
  • scikit-image
workers/properties/points/point_to_nearest_connected_point_distance/environment.yml conda
  • imageio
  • opencv
  • pip
  • python
  • shapely
workers/properties/points/point_to_nearest_point_distance/environment.yml conda
  • imageio
  • opencv
  • pip
  • python
  • shapely
workers/test_worker/environment.yml conda
  • imageio
  • pip
  • python
workers/annotations/laplacian_of_gaussian/Dockerfile docker
  • base latest build
  • ubuntu jammy build
workers/annotations/piscis/predict/Dockerfile docker
  • base latest build
  • nvidia/cuda 12.4.1-devel-ubuntu22.04 build
workers/annotations/piscis/train/Dockerfile docker
  • base latest build
  • nvidia/cuda 12.4.1-devel-ubuntu22.04 build
workers/annotations/cellori_segmentation/environment.yml pypi
workers/annotations/cellpose/environment.yml pypi
  • cellpose *
  • deeptile *
workers/annotations/deepcell/environment.yml pypi
  • deepcell *
  • deeptile *
workers/annotations/laplacian_of_gaussian/environment.yml pypi
workers/annotations/piscis/environment.yml pypi
workers/properties/blobs/blob_annulus_intensity_percentile_worker/environment.yml pypi
workers/properties/blobs/blob_intensity_percentile_worker/environment.yml pypi