InspectorCell
InspectorCell: Finding Ground Truth in Multiplexed Microscopy Images - Published in JOSS (2022)
Science Score: 87.0%
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○CITATION.cff file
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✓DOI references
Found 1 DOI reference(s) in JOSS metadata -
○Academic links in README
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✓JOSS paper metadata
Published in Journal of Open Source Software
Last synced: 4 months ago
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JSON representation
Repository
InspectorCell provides an efficient workflow and graphical interface to generate high-quality training datasets from highly multiplexed microscopy images.
Basic Info
- Host: gitlab.com
- Owner: InspectorCell
- License: apache-2.0
- Default Branch: main
Statistics
- Stars: 0
- Forks: 1
- Open Issues: 4
- Releases: 0
Created about 6 years ago
JOSS Publication
InspectorCell: Finding Ground Truth in Multiplexed Microscopy Images
Published
December 13, 2022
Volume 7, Issue 80, Page 4949
Authors
Andre Gosselink
Institute of Medical Statistics and Computational Biology, Faculty of Medicine, University of Cologne, Cologne, Germany, R&D Department, Miltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany
Institute of Medical Statistics and Computational Biology, Faculty of Medicine, University of Cologne, Cologne, Germany, R&D Department, Miltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany
Tatsiana Hofer
Center for Integrative Bioinformatics Vienna, Max Perutz Labs, University of Vienna, Medical University of Vienna, Vienna, Austria
Center for Integrative Bioinformatics Vienna, Max Perutz Labs, University of Vienna, Medical University of Vienna, Vienna, Austria
Elvira Criado-Moronati
R&D Department, Miltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany
R&D Department, Miltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany
Arndt von Haeseler
Center for Integrative Bioinformatics Vienna, Max Perutz Labs, University of Vienna, Medical University of Vienna, Vienna, Austria, Faculty of Computer Science, University of Vienna, Vienna, Austria
Center for Integrative Bioinformatics Vienna, Max Perutz Labs, University of Vienna, Medical University of Vienna, Vienna, Austria, Faculty of Computer Science, University of Vienna, Vienna, Austria
Jutta Kollet
R&D Department, Miltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany
R&D Department, Miltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany
Editor
Frederick Boehm
Tags
biology multiplex microscopy annotationCommitters
Last synced: 4 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| andreg | a****k@p****e | 65 |
| andreg | a****g@m****e | 47 |
| rikisa | a****k@m****e | 7 |
| InspectorCell | b****s@m****e | 4 |
| andreg | a****g@m****m | 2 |
| Wouter-Michiel Vierdag | w****v@m****e | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 4 months ago
Dependencies
doc/requirements.txt
pypi
- AnyQt *
- PyQt5 *
- numpy *
- opencv-python *
- pyqtgraph *
- sortedcontainers *
requirements.txt
pypi
- AnyQt ==0.0.13
- Orange3 >=3.25.1
- PyQt5 ==5.12.3
- bottleneck ==1.3.2
- dataclasses ==0.6
- h5py ==3.4.0
- numpy ==1.21.4
- opencv-python ==4.5.3.56
- orange3-imageanalytics ==0.6.0
- pathlib ==1.0.1
- pyqt5-sip ==4.19.18
- pyqtgraph ==0.10.0
- pytest ==6.2.5
- pytest-qt ==4.0.2
- sortedcontainers *
- wheel ==0.37.0