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Pycrostates

Pycrostates: a Python library to study EEG microstates - Published in JOSS (2022)

https://github.com/vferat/pycrostates

Science Score: 93.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 8 DOI reference(s) in README and JOSS metadata
  • ✓
    Academic publication links
    Links to: joss.theoj.org, zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ✓
    JOSS paper metadata
    Published in Journal of Open Source Software

Keywords

eeg eeg-analysis

Keywords from Contributors

neuroscience neuroimaging ecog electrocorticography electroencephalography magnetoencephalography meg brain mne brain-computer-interfaces
Last synced: 6 months ago · JSON representation

Repository

Basic Info
Statistics
  • Stars: 39
  • Watchers: 4
  • Forks: 12
  • Open Issues: 24
  • Releases: 11
Topics
eeg eeg-analysis
Created over 5 years ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License

README.md

License PyPI version Conda Version Documentation Status tests codecov Codacy Badge DOI

Pycrostate logo

Pycrostates

An open-source Python package for analyzing EEG microstates developed to work with MNE-python.

Documentation

Documentation Status

The documentation including tutorials and example can be found here.

Installation

Downloads Anaconda-Server Badge

Installation instructions can be found here.

Citing

DOI

The associated paper can be retrieved here: https://joss.theoj.org/papers/10.21105/joss.04564 To cite specific version numbers of the software, you can use the DOIs provided by Zenodo.

Contributing

pre-commit.ci status Code style: black Imports: isort <!-- ALL-CONTRIBUTORS-BADGE:START - Do not remove or modify this section --> All Contributors <!-- ALL-CONTRIBUTORS-BADGE:END -->

Pycrostates welcomes contributions from anyone interested in improving this project. These contributions can take the form of bug reports/fixes, feature requests/additions, documentation revision and new tutorials.

In all cases, it is recommended to open a new issue on Github to discuss the best way to integrate a contribution.

Check the Contribution Guide if you want to make a changes to Pycrostates.

Contributors ✨

Thanks goes to these wonderful people (emoji key):

Victor Férat
Victor Férat
⚠️ 💻 📖 🤔 🚇 🚧 📆 👀		 Mathieu Scheltienne
Mathieu Scheltienne
💻 📖 🤔 🚇 🚧 📆 👀 ⚠️		 Lou
Lou
🎨		 rkobler
rkobler
💻 📖 🤔 ⚠️		 Frederic-vW
Frederic-vW
💻 ✅ 👀		 Eric Larson
Eric Larson
📖 🚇

This project follows the all-contributors specification. Contributions of any kind welcome!

Acknowledgment

Owner

  • Name: Victor Férat
  • Login: vferat
  • Kind: user
  • Location: Genève (CH)
  • Company: Functional Brain Mapping Laboratory - UNIGE

JOSS Publication

Pycrostates: a Python library to study EEG microstates
Published
October 13, 2022
DOI
Volume 7, Issue 78, Page 4564
Authors
Victor Férat ORCID
Functional Brain Mapping Laboratory, Department of Basic Neurosciences, Campus Biotech, University of Geneva, Geneva, Switzerland
Mathieu Scheltienne ORCID
Human Neuroscience Platform, Fondation Campus Biotech Geneva, Geneva, Switzerland
Denis Brunet
Functional Brain Mapping Laboratory, Department of Basic Neurosciences, Campus Biotech, University of Geneva, Geneva, Switzerland, Centre for Biomedical Imaging (CIBM) Lausanne-Geneva, Geneva, Switzerland
Tomas Ros ORCID
Functional Brain Mapping Laboratory, Department of Basic Neurosciences, Campus Biotech, University of Geneva, Geneva, Switzerland, Centre for Biomedical Imaging (CIBM) Lausanne-Geneva, Geneva, Switzerland
Christoph Michel ORCID
Functional Brain Mapping Laboratory, Department of Basic Neurosciences, Campus Biotech, University of Geneva, Geneva, Switzerland, Centre for Biomedical Imaging (CIBM) Lausanne-Geneva, Geneva, Switzerland
Editor
Kevin M. Moerman ORCID
Tags
neuroscience neuroimaging EEG microstates brain
View PDF Review Thread Software Archive

GitHub Events

Total
  • Issues event: 1
  • Watch event: 2
  • Delete event: 28
  • Issue comment event: 5
  • Push event: 61
  • Pull request review event: 3
  • Pull request review comment event: 3
  • Pull request event: 62
  • Create event: 28
Last Year
  • Issues event: 1
  • Watch event: 2
  • Delete event: 28
  • Issue comment event: 5
  • Push event: 61
  • Pull request review event: 3
  • Pull request review comment event: 3
  • Pull request event: 62
  • Create event: 28

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 547
  • Total Committers: 11
  • Avg Commits per committer: 49.727
  • Development Distribution Score (DDS): 0.448
Past Year
  • Commits: 51
  • Committers: 5
  • Avg Commits per committer: 10.2
  • Development Distribution Score (DDS): 0.176
Top Committers
Name Email Commits
Victor Férat v****t@l****r 302
Mathieu Scheltienne m****e@g****m 81
pre-commit-ci[bot] 6****] 69
Mathieu Scheltienne m****e@f****h 53
github-actions[bot] g****] 16
allcontributors[bot] 4****] 12
dependabot[bot] 4****] 9
rkobler k****r@g****m 2
Lou 1****p 1
Eric Larson l****d@g****m 1
AJQuinn A****n 1
Committer Domains (Top 20 + Academic)
fcbg.ch: 1 live.fr: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 46
  • Total pull requests: 254
  • Average time to close issues: 3 months
  • Average time to close pull requests: 8 days
  • Total issue authors: 14
  • Total pull request authors: 12
  • Average comments per issue: 1.87
  • Average comments per pull request: 1.23
  • Merged pull requests: 220
  • Bot issues: 1
  • Bot pull requests: 140
Past Year
  • Issues: 1
  • Pull requests: 75
  • Average time to close issues: N/A
  • Average time to close pull requests: 1 day
  • Issue authors: 1
  • Pull request authors: 4
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.03
  • Merged pull requests: 61
  • Bot issues: 0
  • Bot pull requests: 68
View more stats
Top Authors
Issue Authors
  • mscheltienne (15)
  • Mattlab-hub (8)
  • vferat (8)
  • anshu-97 (5)
  • pre-commit-ci[bot] (2)
  • RunKZhang (1)
  • AJQuinn (1)
  • vahid-sb (1)
  • DominiqueMakowski (1)
  • dependabot[bot] (1)
  • Ricmatgal (1)
  • xinhuaxi0510 (1)
  • nylsp (1)
  • xp752926566 (1)
  • tuliofalmeida (1)
Pull Request Authors
  • pre-commit-ci[bot] (124)
  • mscheltienne (64)
  • vferat (39)
  • dependabot[bot] (12)
  • allcontributors[bot] (10)
  • larsoner (2)
  • rkobler (2)
  • KishiBayes (2)
  • Frederic-vW (2)
  • RunKZhang (1)
  • AJQuinn (1)
  • LouPlanchamp (1)
Top Labels
Issue Labels
🌟 enhancement (9) ❔ question (5) 👀 Review (4) 🐞 bug (2) dependencies (2) 📓 doc (2) clustering (1)
Pull Request Labels
dependencies (14) 🌟 enhancement (7) 📓 doc (4) clustering (2) 🐞 bug (1) github_actions (1)

Packages

  • Total packages: 2
  • Total downloads:
    • pypi 425 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 0
    (may contain duplicates)
  • Total versions: 13
  • Total maintainers: 2
pypi.org: pycrostates

A simple open source Python package for EEG microstate segmentation.

  • Documentation: https://pycrostates.readthedocs.io/
  • License: BSD 3-Clause License Copyright (c) 2020, Victor Férat All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  • Latest release: 0.6.1
    published over 1 year ago
  • Versions: 10
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 425 Last month
Rankings
Dependent packages count: 6.6%
Average: 18.6%
Dependent repos count: 30.6%
Maintainers (2)
mscheltienne vferat
Last synced: 6 months ago
conda-forge.org: pycrostates
  • Versions: 3
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 34.0%
Average: 45.2%
Forks count: 46.0%
Stargazers count: 49.6%
Dependent packages count: 51.2%
Last synced: 6 months ago

Dependencies

.github/workflows/build.yml actions
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  • actions/setup-python v4 composite
.github/workflows/code-style.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
  • codespell-project/actions-codespell master composite
  • isort/isort-action master composite
  • psf/black stable composite
  • py-actions/flake8 v2 composite
.github/workflows/publish.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite