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Open Source Science

https://github.com/bioconductor/annotationdbi

Manipulation of SQLite-based annotations in Bioconductor

https://github.com/bioconductor/annotationdbi

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.5%) to scientific vocabulary

Keywords

bioconductor-package core-package
Last synced: 6 months ago · JSON representation

Repository

Manipulation of SQLite-based annotations in Bioconductor

Basic Info
Statistics
  • Stars: 9
  • Watchers: 9
  • Forks: 10
  • Open Issues: 6
  • Releases: 0
Topics
bioconductor-package core-package
Created over 8 years ago · Last pushed 7 months ago
Metadata Files
Readme Changelog

README.md

AnnotationDbi is an R/Bioconductor package that implements a user-friendly interface for querying SQLite-based annotation data packages.

See https://bioconductor.org/packages/AnnotationDbi for more information including how to install the release version of the package (please refrain from installing directly from GitHub).

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Issues event: 4
  • Issue comment event: 5
  • Push event: 4
Last Year
  • Issues event: 4
  • Issue comment event: 5
  • Push event: 4

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 9
  • Total pull requests: 5
  • Average time to close issues: 3 days
  • Average time to close pull requests: about 9 hours
  • Total issue authors: 9
  • Total pull request authors: 5
  • Average comments per issue: 3.33
  • Average comments per pull request: 4.4
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 1
  • Average time to close issues: about 9 hours
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • LTLA (1)
  • MichaelChirico (1)
  • gerardq675 (1)
  • shanie-landen (1)
  • lambdamoses (1)
  • janstrauss1 (1)
  • JakeLehle (1)
  • jwokaty (1)
  • dmicklem (1)
  • WangYe661 (1)
  • mtmorgan (1)
Pull Request Authors
  • MichaelChirico (1)
  • Kayla-Morrell (1)
  • lckarssen (1)
  • jwokaty (1)
  • BerylKanali (1)
Top Labels
Issue Labels
blocked (1)
Pull Request Labels

Dependencies

DESCRIPTION cran
  • Biobase >= 1.17.0 depends
  • BiocGenerics >= 0.29.2 depends
  • IRanges * depends
  • R >= 2.7.0 depends
  • methods * depends
  • stats4 * depends
  • DBI * imports
  • KEGGREST * imports
  • RSQLite * imports
  • S4Vectors >= 0.9.25 imports
  • stats * imports
  • AnnotationForge * suggests
  • BiocStyle * suggests
  • EnsDb.Hsapiens.v75 * suggests
  • GO.db * suggests
  • RUnit * suggests
  • TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
  • graph * suggests
  • hgu95av2.db * suggests
  • knitr * suggests
  • org.At.tair.db * suggests
  • org.Hs.eg.db * suggests
  • org.Sc.sgd.db * suggests
  • reactome.db * suggests
  • utils * suggests
inst/extdata/org.testing.db/DESCRIPTION cran
  • AnnotationDbi >= 1.23.23 depends
  • R >= 2.7.0 depends
  • methods * depends
  • AnnotationDbi * imports
  • methods * imports
  • RUnit * suggests
  • annotate * suggests