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Open Source Science

https://github.com/bioconductor/txdbmaker

A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)

https://github.com/bioconductor/txdbmaker

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.9%) to scientific vocabulary

Keywords

bioconductor-package core-package
Last synced: 6 months ago · JSON representation

Repository

A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)

Basic Info
  • Host: GitHub
  • Owner: Bioconductor
  • Language: R
  • Default Branch: devel
  • Homepage:
  • Size: 1.13 MB
Statistics
  • Stars: 3
  • Watchers: 9
  • Forks: 1
  • Open Issues: 6
  • Releases: 0
Topics
bioconductor-package core-package
Created over 2 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog

README.md

txdbmaker is an R/Bioconductor package that provides a set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files).

See https://bioconductor.org/packages/txdbmaker for more information including how to install the release version of the package (please refrain from installing directly from GitHub).

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Issues event: 6
  • Watch event: 1
  • Delete event: 1
  • Issue comment event: 13
  • Push event: 15
  • Pull request event: 2
  • Fork event: 1
  • Create event: 2
Last Year
  • Issues event: 6
  • Watch event: 1
  • Delete event: 1
  • Issue comment event: 13
  • Push event: 15
  • Pull request event: 2
  • Fork event: 1
  • Create event: 2

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 9
  • Total pull requests: 1
  • Average time to close issues: 43 minutes
  • Average time to close pull requests: about 4 hours
  • Total issue authors: 8
  • Total pull request authors: 1
  • Average comments per issue: 1.0
  • Average comments per pull request: 2.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 4
  • Pull requests: 0
  • Average time to close issues: 43 minutes
  • Average time to close pull requests: N/A
  • Issue authors: 4
  • Pull request authors: 0
  • Average comments per issue: 0.75
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • Rohit-Satyam (1)
  • duz39 (1)
  • mjsteinbaugh (1)
  • jmacdon (1)
  • hpages (1)
  • Scoupshan (1)
  • mukhyala (1)
  • Muchmorepig (1)
Pull Request Authors
  • LiNk-NY (2)
  • rcastelo (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

DESCRIPTION cran
  • AnnotationDbi * depends
  • BiocGenerics * depends
  • GenomeInfoDb * depends
  • GenomicFeatures * depends
  • GenomicRanges * depends
  • IRanges * depends
  • R >= 4.4.0 depends
  • S4Vectors * depends
  • Biobase * imports
  • BiocIO * imports
  • DBI * imports
  • RSQLite >= 2.0 imports
  • biomaRt * imports
  • methods * imports
  • rtracklayer * imports
  • stats * imports
  • tools * imports
  • utils * imports
  • BiocStyle * suggests
  • RMariaDB * suggests
  • RUnit * suggests
  • ensembldb * suggests
  • knitr * suggests
  • markdown * suggests
  • mirbase.db * suggests
inst/txdb-template/DESCRIPTION cran
  • GenomicFeatures * depends
  • AnnotationDbi * imports