https://github.com/biojulia/substitutionmodels.jl
Biological Sequence Substitution Models for Julia
Science Score: 23.0%
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Committers with academic emails
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○Scientific vocabulary similarity
Low similarity (13.0%) to scientific vocabulary
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Repository
Biological Sequence Substitution Models for Julia
Basic Info
Statistics
- Stars: 17
- Watchers: 12
- Forks: 7
- Open Issues: 0
- Releases: 11
Topics
Metadata Files
README.md
SubstitutionModels.jl
Release status:
Development status:
Description
SubstitutionModels.jl provides facilities to model the substitution process of biological sequences. Such models are essential for the analysis of sequence evolution, phylogenetics, and simulation.
We first aim to provide the most common substitution models used in the literature, but aim to build an extendable framework using julia's type system and traits, so as custom model types can be created and used.
Installation
The current release version can be installed from the Julia REPL:
julia
using Pkg
Pkg.add("SubstitutionModels")
Contributing and Questions
We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features. Please go to the contributing section of the documentation for more information.
If you have a question about contributing or using this package, you are encouraged to use the Bio category of the Julia discourse site.
Owner
- Name: BioJulia
- Login: BioJulia
- Kind: organization
- Website: https://biojulia.dev
- Repositories: 79
- Profile: https://github.com/BioJulia
Bioinformatics and Computational Biology in Julia
GitHub Events
Total
Last Year
Committers
Last synced: 11 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Justin Angevaare | j****a@u****a | 59 |
| Ben J. Ward | w****0@g****m | 13 |
| kgori | k****i@g****m | 6 |
| github-actions[bot] | 4****] | 2 |
| Justin Angevaare | j****b@g****m | 1 |
| Kevin Bonham | k****n@b****h | 1 |
| Morten Piibeleht | m****t@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 4
- Total pull requests: 27
- Average time to close issues: 8 days
- Average time to close pull requests: about 1 month
- Total issue authors: 4
- Total pull request authors: 7
- Average comments per issue: 1.5
- Average comments per pull request: 1.81
- Merged pull requests: 22
- Bot issues: 0
- Bot pull requests: 4
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- kgori (1)
- jangevaare (1)
- JuliaTagBot (1)
Pull Request Authors
- jangevaare (11)
- SabrinaJaye (6)
- github-actions[bot] (4)
- kgori (3)
- coraallensavietta (1)
- kescobo (1)
- mortenpi (1)
Top Labels
Issue Labels
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Packages
- Total packages: 1
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Total downloads:
- julia 2 total
- Total dependent packages: 1
- Total dependent repositories: 0
- Total versions: 8
juliahub.com: SubstitutionModels
Biological Sequence Substitution Models for Julia
- Documentation: https://docs.juliahub.com/General/SubstitutionModels/stable/
- License: MIT
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Latest release: 0.5.0
published almost 5 years ago