https://github.com/biojulia/substitutionmodels.jl - v0.5.0+docs

Update stable docs

https://biojulia.net/SubstitutionModels.jl/stable/

- Julia
Published by jangevaare over 4 years ago

https://github.com/biojulia/substitutionmodels.jl - v0.5.0

SubstitutionModels v0.5.0

• [compat] update
• More consistent constructor safe argument
• Fix docs and CI

Diff since v0.4.2

- Julia
Published by github-actions[bot] almost 5 years ago

https://github.com/biojulia/substitutionmodels.jl - v0.4.2

SubstitutionModels v0.4.2

Diff since v0.4.1

• Generate doi
• Test against Julia 1.5

- Julia
Published by github-actions[bot] almost 6 years ago

https://github.com/biojulia/substitutionmodels.jl - v0.4.1

v0.4.1 (2020-01-19)

Diff since v0.4.0

Merged pull requests:

• Support BioSymbols 3.x to enable Julia 1.0 to pass? (#24) (jangevaare)
• CompatHelper: add new compat entry for "BioSymbols" at version "4.0" (#23) (github-actions[bot])
• CompatHelper: add new compat entry for "StaticArrays" at version "0.12" (#22) (github-actions[bot])
• Docs update (#21) (jangevaare)

- Julia
Published by julia-tagbot[bot] over 6 years ago

https://github.com/biojulia/substitutionmodels.jl - v0.4.0

v0.4.0 (2019-06-12)

Diff since v0.3.0

Closed issues:

• Docs no longer being generated (#19)

Merged pull requests:

• Expansion of constructors methods for Nucleic Acid Substitution Models (#18) (jangevaare)

- Julia
Published by julia-tagbot[bot] almost 7 years ago

https://github.com/biojulia/substitutionmodels.jl - v0.3.0

v0.3.0 (2019-05-28)

Diff since v0.2.3

Merged pull requests:

• Transition to Project.toml (#17) (jangevaare)

- Julia
Published by julia-tagbot[bot] about 7 years ago

https://github.com/biojulia/substitutionmodels.jl - P and Q matrix scaling

• This release adds scaling features to P and Q matrix calculations such that a branch length of 1 means 1 expected substitution per site (#16)

- Julia
Published by jangevaare about 7 years ago

https://github.com/biojulia/substitutionmodels.jl - Bug fix release

• Bug fixes for P matrix calculation for TN93 and related models
• Additional tests for existing models

- Julia
Published by jangevaare about 7 years ago

https://github.com/biojulia/substitutionmodels.jl - Bug fix release

• Update Eigen decomposition function name for Julia 1.0
• Optimization for calculating vectors of P matrices
• JC69 P matrix calculations bug fix

- Julia
Published by jangevaare about 7 years ago

https://github.com/biojulia/substitutionmodels.jl - Julia 0.7/1.0 release

Support for Julia 0.7/1.0 (and support for Julia 0.6 dropped)

- Julia
Published by jangevaare over 7 years ago

https://github.com/biojulia/substitutionmodels.jl - Initial Release

This release provides basic functionality for absolute and relative rate forms of the following common nucleotide substitution models: * JC69, * K80, * F81, * F84, * HKY85, * TN93, and, * GTR.

A framework for adding user defined substitution models is also provided.

- Julia
Published by jangevaare over 8 years ago