https://github.com/biojulia/proteinsecondarystructures.jl
Wrapper to protein secondary structure calculation packages
Science Score: 26.0%
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○CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
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○DOI references
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○Academic publication links
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○Scientific vocabulary similarity
Low similarity (6.8%) to scientific vocabulary
Keywords from Contributors
Repository
Wrapper to protein secondary structure calculation packages
Basic Info
Statistics
- Stars: 14
- Watchers: 5
- Forks: 1
- Open Issues: 0
- Releases: 25
Metadata Files
README.md
ProteinSecondaryStructures.jl
This package parses STRIDE and DSSP secondary structure prediction outputs, to make them convenient to use from Julia, particularly for the analysis of MD simulations.
Documentation
Go to: https://BioJulia.github.io/ProteinSecondaryStructures.jl
Citations
If you use the STRIDE algorithm for secondary structure prediction, please cite:
- Frishman,D & Argos,P. (1995) Knowledge-based secondary structure assignment. Proteins: structure, function and genetics, 23, 566-579.
- Kabsch,W. & Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22: 2577-2637.
If you use the DSSP algorithm for secondary structure prediction, please cite:
- Joosten RP, te Beek TAH, Krieger E, Hekkelman ML, Hooft RWW, Schneider R, Sander C, Vriend A series of PDB related databases for everyday needs. Nuc. Acids Res. 2010; 39:D411-D419.
- Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983; 22:2577-2637.
Owner
- Name: BioJulia
- Login: BioJulia
- Kind: organization
- Website: https://biojulia.dev
- Repositories: 79
- Profile: https://github.com/BioJulia
Bioinformatics and Computational Biology in Julia
GitHub Events
Total
- Watch event: 1
- Push event: 10
- Pull request event: 2
- Create event: 1
Last Year
- Watch event: 1
- Push event: 10
- Pull request event: 2
- Create event: 1
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Leandro Martinez | l****e@u****r | 183 |
| Marco Matthies | 7****m | 6 |
| CompatHelper Julia | c****y@j****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 6
- Total pull requests: 10
- Average time to close issues: 21 days
- Average time to close pull requests: about 2 hours
- Total issue authors: 3
- Total pull request authors: 3
- Average comments per issue: 5.33
- Average comments per pull request: 0.7
- Merged pull requests: 9
- Bot issues: 0
- Bot pull requests: 2
Past Year
- Issues: 0
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- lmiq (4)
- JuliaTagBot (1)
- LV-IQ (1)
Pull Request Authors
- marcom (6)
- lmiq (4)
- github-actions[bot] (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- julia 4 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 18
juliahub.com: ProteinSecondaryStructures
Wrapper to protein secondary structure calculation packages
- Documentation: https://docs.juliahub.com/General/ProteinSecondaryStructures/stable/
- License: MIT
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Latest release: 2.0.3
published about 2 years ago
Rankings
Dependencies
- actions/checkout v3 composite
- julia-actions/cache v1 composite
- julia-actions/julia-buildpkg v1 composite
- julia-actions/julia-runtest v1 composite
- julia-actions/setup-julia v1 composite
- JuliaRegistries/TagBot v1 composite