https://github.com/biojulia/proteinsecondarystructures.jl - v2.0.3

ProteinSecondaryStructures v2.0.3

Diff since v2.0.2

• Bump TestItems compat entry.

- Julia
Published by github-actions[bot] about 2 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v2.0.2

• small doc updates.

- Julia
Published by lmiq about 2 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v2.0.2

ProteinSecondaryStructures v2.0.2

Diff since v2.0.1

• Fix case of BioJulia links.

- Julia
Published by github-actions[bot] about 2 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v2.0.1

ProteinSecondaryStructures v2.0.1

Diff since v2.0.0

• Some documentation improvements.
• Update m3g links to BioJulia links

Merged pull requests: - update docs (#15) (@lmiq)

- Julia
Published by github-actions[bot] about 2 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v2.0.0

ProteinSecondaryStructures v2.0.0

Diff since v1.5.0

New features

• Support for mmCIF files when running DSSP.

Breaking changes:

This is major breaking change relative to the 1.X series, because the package now focuses on being a lightweight and simple tool to compute secondary structures from PDB and mmCIF files only.

• The integration with PDBTools.jl was removed, and will be part of the PDBTools.jl package.
• The functions to analyze the secondary structure along molecular simulations will be moved to the MolSimToolkit.jl package.
• adjust_pdb (previously fix_header) defaults to false in all cases.
  
• kappa, alpha, and area fields were removed from the SSData structure.

- Julia
Published by github-actions[bot] about 2 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v1.5.0

ProteinSecondaryStructures v1.5.0

Diff since v1.4.0

New features:

• New ss_name, ss_number, and ss_code functions.

- Julia
Published by github-actions[bot] about 2 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v1.4.0

ProteinSecondaryStructures v1.4.0

Diff since v1.3.0

• replace class by ss_name (non-breaking because currently class is maintained for legacy).

- Julia
Published by github-actions[bot] about 2 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v1.3.0

ProteinSecondaryStructures v1.3.0

Diff since v1.2.0

New feature:

• Support AbstractChar and AbstracString in ss_code_to_number and ss_number_to_code.

- Julia
Published by github-actions[bot] about 2 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v1.2.0

ProteinSecondaryStructures v1.2.0

Diff since v1.1.0

New feature:

• Exports the ss_classes dictionary with the list of secondary structure classes.

- Julia
Published by github-actions[bot] about 2 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v1.1.0

ProteinSecondaryStructures v1.1.0

Diff since v1.0.2

New features:

• Added ss_code_to_number and ss_number_to_code functions to convert from code to number and vice versa, which can be used by external tools for format conversions and plotting.

- Julia
Published by github-actions[bot] about 2 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v1.0.2

ProteinSecondaryStructures v1.0.2

Diff since v1.0.1

- Julia
Published by github-actions[bot] over 2 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v1.0.1

ProteinSecondaryStructures v1.0.1

Diff since v1.0.0

• Qualify all imports.

- Julia
Published by github-actions[bot] over 2 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v1.0.0

ProteinSecondaryStructures v1.0.0

No breaking changes were introduced in this release.

Diff since v0.3.3

Merged pull requests: - CompatHelper: bump compat for PDBTools to 0.15, (keep existing compat) (#14) (@github-actions[bot])

- Julia
Published by github-actions[bot] almost 3 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v0.3.3

fixed numbering in docs

- Julia
Published by lmiq almost 3 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v0.3.3

ProteinSecondaryStructures v0.3.3

Diff since v0.3.2

Merged pull requests: - Use shorter name for mmcifpdbx.dic file from DSSPjll (#12) (@marcom)

- Julia
Published by github-actions[bot] almost 3 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v0.3.2

What's Changed

• Set tight compat bounds for DSSP_jll by @marcom in https://github.com/m3g/ProteinSecondaryStructures.jl/pull/9
• Use DSSP_jll v4.4.0 by @marcom in https://github.com/m3g/ProteinSecondaryStructures.jl/pull/10
• Split on crlf line endings on windows by @marcom in https://github.com/m3g/ProteinSecondaryStructures.jl/pull/11

Full Changelog: https://github.com/m3g/ProteinSecondaryStructures.jl/compare/v0.3.1...v0.3.2

- Julia
Published by lmiq about 3 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v0.3.1

Full Changelog: https://github.com/m3g/ProteinSecondaryStructures.jl/compare/v0.3.1+docs1...v0.3.1+docs2

- Julia
Published by lmiq about 3 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v0.3.1

- Julia
Published by lmiq about 3 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v0.3.1

ProteinSecondaryStructures v0.3.1

Diff since v0.3.0

- Julia
Published by github-actions[bot] about 3 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v0.3.0

update docs

- Julia
Published by lmiq about 3 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v0.3.0

added docs

- Julia
Published by lmiq about 3 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v0.3.0

Update some docs.

- Julia
Published by lmiq about 3 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v0.3.0

ProteinSecondaryStructures v0.3.0

Diff since v0.2.0

Closed issues: - Provide DSSP and Stride binaries (#3)

Merged pull requests: - Use STRIDEjll and DSSPjll instead of user-installed executables (#6) (@marcom) - Run Aqua.test_all during tests (#7) (@marcom)

- Julia
Published by github-actions[bot] about 3 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v0.2.0

ProteinSecondaryStructures v0.2.0

Breaking change: rename is_helix and is_strand to is_anyhelix and is_anystrand to avoid confusion with is_alphahelix and is_betastrand.

Diff since v0.1.0

- Julia
Published by github-actions[bot] about 3 years ago

https://github.com/biojulia/proteinsecondarystructures.jl - v0.1.0

ProteinSecondaryStructures v0.1.0

Closed issues: - Computing the secondary structure map - ''KeyError: key "b" not found'' (#1)

- Julia
Published by github-actions[bot] about 3 years ago