Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/biometris/statgenhtp

See https://biometris.github.io/statgenHTP for a full description

https://github.com/biometris/statgenhtp

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.8%) to scientific vocabulary

Keywords

cran genetics high-troughput-phenotyping r-package
Last synced: 5 months ago · JSON representation

Repository

See https://biometris.github.io/statgenHTP for a full description

Basic Info
Statistics
  • Stars: 6
  • Watchers: 4
  • Forks: 2
  • Open Issues: 1
  • Releases: 0
Topics
cran genetics high-troughput-phenotyping r-package
Created almost 5 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# statgenHTP

[![](https://www.r-pkg.org/badges/version/statgenHTP)](https://www.r-pkg.org/pkg/statgenHTP)
[![CRAN RStudio mirror downloads](https://cranlogs.r-pkg.org/badges/statgenHTP)](https://www.r-pkg.org/pkg/statgenHTP)
[![R-CMD-check](https://github.com/Biometris/statgenHTP/workflows/R-CMD-check/badge.svg)](https://github.com/Biometris/statgenHTP/actions?workflow=R-CMD-check)
[![codecov](https://codecov.io/gh/Biometris/statgenHTP/branch/main/graph/badge.svg)](https://app.codecov.io/gh/Biometris/statgenHTP)


**statgenHTP** is developed as an easy-to-use package for analyzing data coming 
from high throughput phenotyping (HTP) platform experiments. The package provides many options for plotting and exporting the results of the analyses. It was developed within the [EPPN^2020^ project](https://cordis.europa.eu/project/id/731013) to meet the needs for automated analyses of HTP data.

## Installation

* Install from CRAN:

```{r, eval = FALSE}
install.packages("statgenHTP")
```

* Install latest development version from GitHub (requires [remotes](https://github.com/r-lib/remotes) package):

```{r, eval = FALSE}
remotes::install_github("Biometris/statgenHTP", ref = "develop", dependencies = TRUE)
```

Owner

  • Name: Wageningen Universtiy & Research, Biometris
  • Login: Biometris
  • Kind: organization
  • Email: biometris@wur.nl
  • Location: Wageningen, The Netherlands

Biometris develops statistical and mathematical methods for the quantification of biological processes and processes in our living environment.

GitHub Events

Total
  • Issues event: 5
  • Watch event: 3
  • Issue comment event: 5
  • Push event: 25
  • Create event: 3
Last Year
  • Issues event: 5
  • Watch event: 3
  • Issue comment event: 5
  • Push event: 25
  • Create event: 3

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 812
  • Total Committers: 3
  • Avg Commits per committer: 270.667
  • Development Distribution Score (DDS): 0.193
Past Year
  • Commits: 197
  • Committers: 2
  • Avg Commits per committer: 98.5
  • Development Distribution Score (DDS): 0.35
Top Committers
Name Email Commits
Rossum, Bart-Jan van b****m@w****l 655
mille016 e****t@w****l 86
dperez d****z@b****g 71
Committer Domains (Top 20 + Academic)
wur.nl: 2 bcamath.org: 1

Issues and Pull Requests

Last synced: over 2 years ago

All Time
  • Total issues: 2
  • Total pull requests: 0
  • Average time to close issues: 2 days
  • Average time to close pull requests: N/A
  • Total issue authors: 2
  • Total pull request authors: 0
  • Average comments per issue: 3.5
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 0
  • Average time to close issues: 2 days
  • Average time to close pull requests: N/A
  • Issue authors: 2
  • Pull request authors: 0
  • Average comments per issue: 3.5
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • teunbrand (1)
  • UQDannySmith (1)
  • LouiseLogie (1)
  • kkjjag (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 429 last-month
  • Total docker downloads: 21,613
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 12
  • Total maintainers: 1
cran.r-project.org: statgenHTP

High Throughput Phenotyping (HTP) Data Analysis

  • Versions: 12
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 429 Last month
  • Docker Downloads: 21,613
Rankings
Forks count: 21.9%
Stargazers count: 26.2%
Dependent packages count: 29.8%
Average: 31.2%
Dependent repos count: 35.5%
Downloads: 42.5%
Maintainers (1)
bart-jan.vanrossum@wur.nl
Last synced: 6 months ago

Dependencies

DESCRIPTION cran
  • R >= 3.6 depends
  • LMMsolver * imports
  • SpATS >= 1.0 imports
  • animation * imports
  • factoextra * imports
  • ggforce * imports
  • ggnewscale * imports
  • ggplot2 >= 3.3.0 imports
  • grid * imports
  • gridExtra * imports
  • locfit * imports
  • lubridate * imports
  • reshape2 * imports
  • scales * imports
  • asreml >= 4.0 suggests
  • knitr * suggests
  • rmarkdown * suggests
  • tinytest >= 1.2.4 suggests
.github/workflows/check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test-coverage.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite