https://github.com/breeding-insight/bigr
This R package contains the functions developed within Breeding Insight to analyze diploid and polyploid breeding and genetic data
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.1%) to scientific vocabulary
Repository
This R package contains the functions developed within Breeding Insight to analyze diploid and polyploid breeding and genetic data
Basic Info
- Host: GitHub
- Owner: Breeding-Insight
- License: apache-2.0
- Language: R
- Default Branch: main
- Homepage: https://breedinginsight.org/
- Size: 8.87 MB
Statistics
- Stars: 1
- Watchers: 2
- Forks: 3
- Open Issues: 1
- Releases: 9
Metadata Files
README.md
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BIGr 
Core Genomic Analysis Functions for Breeding Insight
BIGr is an R package developed by Breeding Insight that provides a robust set of functions for analyzing genomic and pedigree data in diploid and polyploid breeding programs. It's designed to streamline the analysis of breeding and genetic data, empowering researchers and breeders to make informed decisions.
Installation
The stable version of BIGr is now available on CRAN. To install from the R terminal:
R
install.packages("BIGr")
To install the development version of BIGr, you'll need to have BiocManager installed. Then, install from GitHub.
```R
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
install.packages("remotes")
BiocManager::install("Breeding-Insight/BIGr", dependencies = TRUE) library(BIGr) ``` Note: This GitHub version of BIGr is in development. So, there could be bugs present, and the stable version of BIGr on CRAN should be viewed as more reliable.
Funding
BIGr development is supported by Breeding Insight, a USDA-funded initiative based at Cornell University.
Citation
If you use BIGr in your research, please cite as:
Sandercock, Alexander M., Cristiane H. Taniguti, Josue Chinchilla-Vargas, Dongyan Zhao, Shufen Chen, Meng Lin, Manoj Sapkota, and Breeding Insight Team. 2025. “Breeding Insight Genomics Functions for Polypoid and Diploid Species.” https://github.com/Breeding-Insight/BIGr.
Owner
- Name: Breeding Insight
- Login: Breeding-Insight
- Kind: organization
- Website: https://breedinginsight.org
- Repositories: 12
- Profile: https://github.com/Breeding-Insight
Combining genomics and informatics to accelerate genetic gains.
GitHub Events
Total
- Create event: 18
- Issues event: 2
- Release event: 5
- Watch event: 1
- Delete event: 10
- Issue comment event: 8
- Member event: 2
- Push event: 116
- Pull request review comment event: 8
- Pull request review event: 27
- Pull request event: 50
- Fork event: 2
Last Year
- Create event: 18
- Issues event: 2
- Release event: 5
- Watch event: 1
- Delete event: 10
- Issue comment event: 8
- Member event: 2
- Push event: 116
- Pull request review comment event: 8
- Pull request review event: 27
- Pull request event: 50
- Fork event: 2
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 2
- Total pull requests: 22
- Average time to close issues: 5 days
- Average time to close pull requests: 3 days
- Total issue authors: 2
- Total pull request authors: 3
- Average comments per issue: 0.5
- Average comments per pull request: 0.23
- Merged pull requests: 18
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 22
- Average time to close issues: 5 days
- Average time to close pull requests: 3 days
- Issue authors: 2
- Pull request authors: 3
- Average comments per issue: 0.5
- Average comments per pull request: 0.23
- Merged pull requests: 18
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- alex-sandercock (2)
- H20tters (1)
Pull Request Authors
- alex-sandercock (14)
- Cristianetaniguti (12)
- josuechinchilla (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- cran 339 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 1
- Total maintainers: 1
cran.r-project.org: BIGr
Breeding Insight Genomics Functions for Polyploid and Diploid Species
- Homepage: https://github.com/Breeding-Insight/BIGr
- Documentation: http://cran.r-project.org/web/packages/BIGr/BIGr.pdf
- License: Apache License (≥ 2)
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Latest release: 0.5.5
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- R >= 4.0.0 depends
- Rdpack >= 0.7 imports
- doParallel * imports
- dplyr * imports
- foreach * imports
- kinship2 >= 1.9.6.1 imports