pkglite

Compact Package Representations

https://github.com/merck/pkglite

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 3 DOI reference(s) in README
○
Academic publication links
○
Committers with academic emails
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (15.8%) to scientific vocabulary

Keywords

clinical-trials ectd package packaging-tool pharmaverse r

Last synced: 6 months ago · JSON representation ·

Repository

Compact Package Representations

Basic Info

Host: GitHub
Owner: Merck
License: gpl-3.0
Language: R
Default Branch: master
Homepage: https://merck.github.io/pkglite/
Size: 2.02 MB

Statistics

Stars: 29
Watchers: 8
Forks: 4
Open Issues: 5
Releases: 7

Topics

clinical-trials ectd package packaging-tool pharmaverse r

Created almost 5 years ago · Last pushed over 1 year ago

Metadata Files

Readme Changelog License Citation

pkglite

A tool, grammar, and standard to represent and exchange R package source code as text files. Converts one or more source packages to a text file and restores the package structures from the file.

To get started, see vignette("pkglite").
To generate file specifications, see vignette("filespec").
To curate file collections, see vignette("filecollection").
The text file format is described in vignette("format").

Installation

You can install the package via CRAN:

r install.packages("pkglite")

Or, install from GitHub:

r remotes::install_github("Merck/pkglite")

Workflow

r library("pkglite")

Pack one R package:

r "/path/to/package/" %>% collate(file_default()) %>% pack()

Pack multiple R packages:

r pack( "/path/to/pkg1/" %>% collate(file_default()), "/path/to/pkg2/" %>% collate(file_default()), output = "/path/to/pkglite.txt" )

Unpack one or more packages:

r "/path/to/pkglite.txt" %>% unpack(output = "/path/to/output/")

Citation

If you use this software, please cite it as below.

Zhao, Y., Xiao, N., Anderson, K., & Zhang, Y. (2023). Electronic common technical document submission with analysis using R. Clinical Trials, 20(1), 89--92. https://doi.org/10.1177/17407745221123244

A BibTeX entry for LaTeX users is

bibtex @article{zhao2023electronic, title = {Electronic common technical document submission with analysis using {R}}, author = {Zhao, Yujie and Xiao, Nan and Anderson, Keaven and Zhang, Yilong}, journal = {Clinical Trials}, volume = {20}, number = {1}, pages = {89--92}, year = {2023}, doi = {10.1177/17407745221123244} }

Owner

Name: Merck Sharp & Dohme Corp. a subsidiary of Merck & Co., Inc.
Login: Merck
Kind: organization
Location: Kenilworth, NJ

Website: http://www.merck.com
Repositories: 34
Profile: https://github.com/Merck

Citation (CITATION.cff)

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Xiao"
  given-names: "Nan"
  orcid: "https://orcid.org/0000-0002-0250-5673"
- family-names: "Zhang"
  given-names: "Yilong"
- family-names: "Anderson"
  given-names: "Keaven"
title: "pkglite: Compact Package Representations"
version: 0.2.1
date-released: 2021-03-08
url: "https://github.com/Merck/pkglite"
preferred-citation:
  type: article
  authors:
  - family-names: "Zhao"
    given-names: "Yujie"
    orcid: "https://orcid.org/0000-0003-2896-4955"
  - family-names: "Xiao"
    given-names: "Nan"
    orcid: "https://orcid.org/0000-0002-0250-5673"
  - family-names: "Anderson"
    given-names: "Keaven"
  - family-names: "Zhang"
    given-names: "Yilong"
  title: "Electronic common technical document submission with analysis using R"
  journal: "Clinical Trials"
  year: 2023
  volume: 20
  issue: 1
  start: 89
  end: 92
  doi: "10.1177/17407745221123244"

GitHub Events

Total

Create event: 2
Release event: 1
Issues event: 2
Delete event: 2
Issue comment event: 1
Push event: 5
Pull request review event: 2
Pull request event: 4

Last Year

Create event: 2
Release event: 1
Issues event: 2
Delete event: 2
Issue comment event: 1
Push event: 5
Pull request review event: 2
Pull request event: 4

Committers

Last synced: 11 months ago

All Time

Total Commits: 105
Total Committers: 6
Avg Commits per committer: 17.5
Development Distribution Score (DDS): 0.086

Past Year

Commits: 21
Committers: 1
Avg Commits per committer: 21.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Nan Xiao	me@n****e	96
Amin Shirazi	a**i@m**m	3
turnbach	m**h@m**m	2
Fu Danfeng	9****u	2
Yilong Zhang	y**g@m**m	1
Shirazi	s**m@c**m	1

Committer Domains (Top 20 + Academic)

merck.com: 3 ctchpcvarst002.merck.com: 1 nanx.me: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 39
Total pull requests: 20
Average time to close issues: about 1 month
Average time to close pull requests: 1 day
Total issue authors: 5
Total pull request authors: 3
Average comments per issue: 1.28
Average comments per pull request: 0.35
Merged pull requests: 20
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 3
Pull requests: 8
Average time to close issues: 1 day
Average time to close pull requests: about 8 hours
Issue authors: 2
Pull request authors: 1
Average comments per issue: 1.0
Average comments per pull request: 0.0
Merged pull requests: 8
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

nanxstats (28)
elong0527 (7)
SHAESEN2 (3)
ggrothendieck (1)
jhk0530 (1)

Pull Request Authors

nanxstats (27)
ashirazist (2)
elong0527 (1)

Top Labels

Issue Labels

enhancement (14) documentation (3) release (3) testing (3) bug (3) cran (2) wontfix (1)

Pull Request Labels

documentation (4) enhancement (2) chore (2)

Packages

Total packages: 1
Total downloads:
- cran 725 last-month

Total dependent packages: 1
Total dependent repositories: 2
Total versions: 6
Total maintainers: 1

cran.r-project.org: pkglite

Compact Package Representations

Homepage: https://merck.github.io/pkglite/
Documentation: http://cran.r-project.org/web/packages/pkglite/pkglite.pdf
License: GPL-3
Latest release: 0.2.4
published over 1 year ago

Versions: 6
Dependent Packages: 1
Dependent Repositories: 2
Downloads: 725 Last month

Rankings

Stargazers count: 10.2%

Forks count: 12.2%

Average: 18.0%

Dependent repos count: 19.3%

Downloads: 19.6%

Dependent packages count: 28.8%

Maintainers (1)

nan.xiao1@merck.com

Last synced: 6 months ago

Dependencies

DESCRIPTION cran

R >= 3.5.0 depends
crayon * imports
magrittr * imports
remotes * imports
covr * suggests
knitr * suggests
rmarkdown * suggests
testthat * suggests

inst/examples/pkg1/DESCRIPTION cran

R >= 3.5.0 depends
knitr * suggests
rmarkdown * suggests

inst/examples/pkg2/DESCRIPTION cran

R >= 3.5.0 depends
knitr * suggests
rmarkdown * suggests

.github/workflows/R-CMD-check.yaml actions

actions/checkout v3 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.4.1 composite
actions/checkout v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/test-coverage.yaml actions

actions/checkout v3 composite
actions/upload-artifact v3 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

pkglite

Science Score: 57.0%

Keywords

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

pkglite

Installation

Workflow

Citation

Owner

Citation (CITATION.cff)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

cran.r-project.org: pkglite

Rankings

Maintainers (1)

Dependencies