SpaDES.tools

Additional modelling tools for Spatial Discrete Event Simulation (SpaDES) module development

https://github.com/predictiveecology/spades.tools

Science Score: 54.0%

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CITATION.cff file
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DOI references
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Keywords

Last synced: 7 months ago · JSON representation ·

Repository

Additional modelling tools for Spatial Discrete Event Simulation (SpaDES) module development

Basic Info

Host: GitHub
Owner: PredictiveEcology
License: gpl-3.0
Language: R
Default Branch: main
Homepage: https://spades-tools.predictiveecology.org/
Size: 10.7 MB

Statistics

Stars: 4
Watchers: 4
Forks: 7
Open Issues: 2
Releases: 19

Topics

Created almost 9 years ago · Last pushed 11 months ago

Metadata Files

Readme Changelog Contributing License Citation

README.md

SpaDES.tools

Additional modelling tools for Spatial Discrete Event Simulation (SpaDES) module development.

Provides GIS/map utilities and additional modeling tools for developing cellular automata and agent based models in SpaDES.

Website: https://SpaDES.PredictiveEcology.org

Wiki: https://github.com/PredictiveEcology/SpaDES/wiki

Installation

Building packages from source requires the appropriate development libraries for your operating system (e.g., Windows users should install Rtools).

Current stable release

Install from CRAN:

r install.packages("SpaDES.tools")

Install from GitHub:

```r

install.packages("devtools")

library("devtools") install_github("PredictiveEcology/SpaDES.tools", dependencies = TRUE) # master ```

Development version (unstable)

Install from GitHub:

```r

install.packages("devtools")

library("devtools") install_github("PredictiveEcology/SpaDES.tools", ref = "development", dependencies = TRUE) ```

Contributions

Please see CONTRIBUTING.md for information on how to contribute to this project.

Owner

Name: Predictive Ecology Group
Login: PredictiveEcology
Kind: organization
Location: Victoria, BC, Canada

Website: https://PredictiveEcology.org
Repositories: 119
Profile: https://github.com/PredictiveEcology

Ecological forecasting models and data

Citation (CITATION.cff)

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "SpaDES.tools" in publications use:'
type: software
license: GPL-3.0-only
title: 'SpaDES.tools: Additional Tools for Developing Spatially Explicit Discrete
  Event Simulation (SpaDES) Models'
version: 2.0.7
abstract: 'Provides GIS and map utilities, plus additional modeling tools for developing
  cellular automata, dynamic raster models, and agent based models in ''SpaDES''.
  Included are various methods for spatial spreading, spatial agents, GIS operations,
  random map generation, and others. See ''?SpaDES.tools'' for an categorized overview
  of these additional tools. The suggested package ''NLMR'' can be installed from
  the following repository: (<https://PredictiveEcology.r-universe.dev>).'
authors:
- family-names: McIntire
  given-names: Eliot J B
  email: eliot.mcintire@nrcan-rncan.gc.ca
  orcid: https://orcid.org/0000-0002-6914-8316
- family-names: Chubaty
  given-names: Alex M
  email: achubaty@for-cast.ca
  orcid: https://orcid.org/0000-0001-7146-8135
repository: https://CRAN.R-project.org/package=SpaDES.tools
repository-code: https://github.com/PredictiveEcology/SpaDES.tools
url: https://spades-tools.predictiveecology.org
date-released: '2024-05-14'
contact:
- family-names: Chubaty
  given-names: Alex M
  email: achubaty@for-cast.ca
  orcid: https://orcid.org/0000-0001-7146-8135
keywords: r
references:
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  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
  version: '>= 4.2'
- type: software
  title: backports
  abstract: 'backports: Reimplementations of Functions Introduced Since R-3.0.0'
  notes: Imports
  url: https://github.com/r-lib/backports
  repository: https://CRAN.R-project.org/package=backports
  authors:
  - family-names: Lang
    given-names: Michel
    email: michellang@gmail.com
    orcid: https://orcid.org/0000-0001-9754-0393
  - family-names: Murdoch
    given-names: Duncan
    email: murdoch.duncan@gmail.com
  - name: R Core Team
  year: '2024'
- type: software
  title: checkmate
  abstract: 'checkmate: Fast and Versatile Argument Checks'
  notes: Imports
  url: https://mllg.github.io/checkmate/
  repository: https://CRAN.R-project.org/package=checkmate
  authors:
  - family-names: Lang
    given-names: Michel
    email: michellang@gmail.com
    orcid: https://orcid.org/0000-0001-9754-0393
  year: '2024'
  version: '>= 1.8.2'
- type: software
  title: data.table
  abstract: 'data.table: Extension of `data.frame`'
  notes: Imports
  url: https://r-datatable.com
  repository: https://CRAN.R-project.org/package=data.table
  authors:
  - family-names: Barrett
    given-names: Tyson
    email: t.barrett88@gmail.com
  - family-names: Dowle
    given-names: Matt
    email: mattjdowle@gmail.com
  - family-names: Srinivasan
    given-names: Arun
    email: asrini@pm.me
  - family-names: Gorecki
    given-names: Jan
  - family-names: Chirico
    given-names: Michael
  - family-names: Hocking
    given-names: Toby
    orcid: https://orcid.org/0000-0002-3146-0865
  year: '2024'
  version: '>= 1.10.4'
- type: software
  title: fpCompare
  abstract: 'fpCompare: Reliable Comparison of Floating Point Numbers'
  notes: Imports
  url: https://github.com/PredictiveEcology/fpCompare
  repository: https://CRAN.R-project.org/package=fpCompare
  authors:
  - family-names: Chubaty
    given-names: Alex M
    email: achubaty@for-cast.ca
    orcid: https://orcid.org/0000-0001-7146-8135
  year: '2024'
  version: '>= 0.2.1'
- type: software
  title: graphics
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: methods
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: parallel
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: Rcpp
  abstract: 'Rcpp: Seamless R and C++ Integration'
  notes: Imports
  url: https://www.rcpp.org
  repository: https://CRAN.R-project.org/package=Rcpp
  authors:
  - family-names: Eddelbuettel
    given-names: Dirk
  - family-names: Francois
    given-names: Romain
  - family-names: Allaire
    given-names: JJ
  - family-names: Ushey
    given-names: Kevin
  - family-names: Kou
    given-names: Qiang
  - family-names: Russell
    given-names: Nathan
  - family-names: Ucar
    given-names: Inaki
  - family-names: Bates
    given-names: Douglas
  - family-names: Chambers
    given-names: John
  year: '2024'
  version: '>= 0.12.12'
- type: software
  title: reproducible
  abstract: 'reproducible: Enhance Reproducibility of R Code'
  notes: Imports
  url: https://reproducible.predictiveecology.org
  repository: https://CRAN.R-project.org/package=reproducible
  authors:
  - family-names: McIntire
    given-names: Eliot J B
    email: eliot.mcintire@canada.ca
    orcid: https://orcid.org/0000-0002-6914-8316
  - family-names: Chubaty
    given-names: Alex M
    email: achubaty@for-cast.ca
    orcid: https://orcid.org/0000-0001-7146-8135
  year: '2024'
  version: '>= 2.0.9'
- type: software
  title: stats
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: terra
  abstract: 'terra: Spatial Data Analysis'
  notes: Imports
  url: https://rspatial.org/
  repository: https://CRAN.R-project.org/package=terra
  authors:
  - family-names: Hijmans
    given-names: Robert J.
    email: r.hijmans@gmail.com
    orcid: https://orcid.org/0000-0001-5872-2872
  year: '2024'
- type: software
  title: animation
  abstract: 'animation: A Gallery of Animations in Statistics and Utilities to Create
    Animations'
  notes: Suggests
  url: https://yihui.org/animation/
  repository: https://CRAN.R-project.org/package=animation
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
  year: '2024'
- type: software
  title: bit
  abstract: 'bit: Classes and Methods for Fast Memory-Efficient Boolean Selections'
  notes: Suggests
  url: https://github.com/truecluster/bit
  repository: https://CRAN.R-project.org/package=bit
  authors:
  - family-names: Oehlschlägel
    given-names: Jens
  - family-names: Ripley
    given-names: Brian
  year: '2024'
  version: '>= 1.1-12'
- type: software
  title: covr
  abstract: 'covr: Test Coverage for Packages'
  notes: Suggests
  url: https://covr.r-lib.org
  repository: https://CRAN.R-project.org/package=covr
  authors:
  - family-names: Hester
    given-names: Jim
    email: james.f.hester@gmail.com
  year: '2024'
- type: software
  title: DEoptim
  abstract: 'DEoptim: Global Optimization by Differential Evolution'
  notes: Suggests
  url: https://github.com/ArdiaD/DEoptim
  repository: https://CRAN.R-project.org/package=DEoptim
  authors:
  - family-names: Ardia
    given-names: David
    email: david.ardia.ch@gmail.com
    orcid: https://orcid.org/0000-0003-2823-782X
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  - family-names: Peterson
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  - family-names: Ulrich
    given-names: Joshua
  year: '2024'
  version: '>= 2.2-4'
- type: software
  title: dqrng
  abstract: 'dqrng: Fast Pseudo Random Number Generators'
  notes: Suggests
  url: https://daqana.github.io/dqrng/
  repository: https://CRAN.R-project.org/package=dqrng
  authors:
  - family-names: Stubner
    given-names: Ralf
    email: ralf.stubner@gmail.com
    orcid: https://orcid.org/0009-0009-1908-106X
  year: '2024'
- type: software
  title: fastmatch
  abstract: 'fastmatch: Fast ''match()'' Function'
  notes: Suggests
  url: http://www.rforge.net/fastmatch
  repository: https://CRAN.R-project.org/package=fastmatch
  authors:
  - family-names: Urbanek
    given-names: Simon
    email: simon.urbanek@r-project.org
  year: '2024'
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2024'
- type: software
  title: NLMR
  abstract: 'NLMR: Simulating Neutral Landscape Models'
  notes: Suggests
  url: https://ropensci.github.io/NLMR/
  authors:
  - family-names: Sciaini
    given-names: Marco
    email: marco.sciaini@posteo.net
    orcid: https://orcid.org/0000-0002-3042-5435
  - family-names: Fritsch
    given-names: Matthias
    email: matthias.fritsch@forst.uni-goettingen.de
  - family-names: Hesselbarth
    given-names: Maximilian
    email: mhk.hesselbarth@gmail.com
  - family-names: Simpkins
    given-names: Craig
    email: simpkinscraig063@gmail.com
    orcid: https://orcid.org/0000-0003-3212-1379
  - family-names: Scherer
    given-names: Cédric
    email: cedricphilippscherer@gmail.com
    orcid: https://orcid.org/0000-0003-0465-2543
  - family-names: Hanß
    given-names: Sebastian
    orcid: https://orcid.org/0000-0002-3990-4897
  year: '2024'
  version: '>= 1.1.1'
- type: software
  title: quickPlot
  abstract: 'quickPlot: A System of Plotting Optimized for Speed and Modularity'
  notes: Suggests
  url: https://quickplot.predictiveecology.org
  repository: https://CRAN.R-project.org/package=quickPlot
  authors:
  - family-names: McIntire
    given-names: Eliot J B
    email: eliot.mcintire@canada.ca
    orcid: https://orcid.org/0000-0002-6914-8316
  - family-names: Chubaty
    given-names: Alex M
    email: achubaty@for-cast.ca
    orcid: https://orcid.org/0000-0001-7146-8135
  year: '2024'
  version: '>= 1.0.2'
- type: software
  title: raster
  abstract: 'raster: Geographic Data Analysis and Modeling'
  notes: Suggests
  url: https://rspatial.org/raster
  repository: https://CRAN.R-project.org/package=raster
  authors:
  - family-names: Hijmans
    given-names: Robert J.
    email: r.hijmans@gmail.com
    orcid: https://orcid.org/0000-0001-5872-2872
  year: '2024'
  version: '>= 2.5-8'
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2024'
- type: software
  title: sf
  abstract: 'sf: Simple Features for R'
  notes: Suggests
  url: https://r-spatial.github.io/sf/
  repository: https://CRAN.R-project.org/package=sf
  authors:
  - family-names: Pebesma
    given-names: Edzer
    email: edzer.pebesma@uni-muenster.de
    orcid: https://orcid.org/0000-0001-8049-7069
  year: '2024'
- type: software
  title: sp
  abstract: 'sp: Classes and Methods for Spatial Data'
  notes: Suggests
  url: https://github.com/edzer/sp/
  repository: https://CRAN.R-project.org/package=sp
  authors:
  - family-names: Pebesma
    given-names: Edzer
    email: edzer.pebesma@uni-muenster.de
  - family-names: Bivand
    given-names: Roger
    email: Roger.Bivand@nhh.no
  year: '2024'
  version: '>= 1.2-4'
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
  version: '>= 3.0.0'
- type: software
  title: tools
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Suggests
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: withr
  abstract: 'withr: Run Code ''With'' Temporarily Modified Global State'
  notes: Suggests
  url: https://withr.r-lib.org
  repository: https://CRAN.R-project.org/package=withr
  authors:
  - family-names: Hester
    given-names: Jim
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Müller
    given-names: Kirill
    email: krlmlr+r@mailbox.org
  - family-names: Ushey
    given-names: Kevin
    email: kevinushey@gmail.com
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Chang
    given-names: Winston
  year: '2024'
- type: software
  title: Rcpp
  abstract: 'Rcpp: Seamless R and C++ Integration'
  notes: Imports
  url: https://www.rcpp.org
  repository: https://CRAN.R-project.org/package=Rcpp
  authors:
  - family-names: Eddelbuettel
    given-names: Dirk
  - family-names: Francois
    given-names: Romain
  - family-names: Allaire
    given-names: JJ
  - family-names: Ushey
    given-names: Kevin
  - family-names: Kou
    given-names: Qiang
  - family-names: Russell
    given-names: Nathan
  - family-names: Ucar
    given-names: Inaki
  - family-names: Bates
    given-names: Douglas
  - family-names: Chambers
    given-names: John
  year: '2024'

GitHub Events

Total

Push event: 6
Pull request event: 1
Fork event: 1
Create event: 2

Last Year

Push event: 6
Pull request event: 1
Fork event: 1
Create event: 2

Committers

Last synced: over 2 years ago

All Time

Total Commits: 926
Total Committers: 9
Avg Commits per committer: 102.889
Development Distribution Score (DDS): 0.718

Past Year

Commits: 258
Committers: 5
Avg Commits per committer: 51.6
Development Distribution Score (DDS): 0.651

Top Committers

Name	Email	Commits
Eliot McIntire	e**e@g**m	261
Alex Chubaty	a**y@g**m	248
Alex Chubaty	a**y@f**a	199
Eliot McIntire	e**i@m**a	108
CeresBarros	c**s@m**a	45
JM	j**l@g**m	36
Ian Eddy	i**y@g**m	11
Tati Micheletti	t**i@g**m	11
cbarros	c**s@h**m	7

Committer Domains (Top 20 + Academic)

mail.ubc.ca: 2 for-cast.ca: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time

Total issues: 39
Total pull requests: 59
Average time to close issues: 5 months
Average time to close pull requests: 9 days
Total issue authors: 10
Total pull request authors: 7
Average comments per issue: 1.97
Average comments per pull request: 1.42
Merged pull requests: 41
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 0
Pull requests: 2
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 0
Pull request authors: 1
Average comments per issue: 0
Average comments per pull request: 0.0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

achubaty (26)
tati-micheletti (3)
CeresBarros (3)
anbm-dk (1)
rsbivand (1)
cntrouniv (1)
crosbya1 (1)
tylerdrudolph (1)
eliotmcintire (1)
TylerMuhly (1)

Pull Request Authors

eliotmcintire (18)
tati-micheletti (10)
achubaty (8)
CeresBarros (8)
ianmseddy (8)
ygc2l (7)
rstub (2)

Top Labels

Issue Labels

enhancement (1) Low priority (1) agent based model (1) question (1)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- cran 859 last-month

Total dependent packages: 4
Total dependent repositories: 12
Total versions: 20
Total maintainers: 1

cran.r-project.org: SpaDES.tools

Additional Tools for Developing Spatially Explicit Discrete Event Simulation (SpaDES) Models

Homepage: https://spades-tools.predictiveecology.org
Documentation: http://cran.r-project.org/web/packages/SpaDES.tools/SpaDES.tools.pdf
License: GPL-3
Latest release: 2.0.7
published almost 2 years ago

Versions: 20
Dependent Packages: 4
Dependent Repositories: 12
Downloads: 859 Last month

Rankings

Dependent repos count: 8.3%

Dependent packages count: 9.3%

Forks count: 10.8%

Average: 13.6%

Downloads: 15.9%

Stargazers count: 23.6%

Maintainers (1)

achubaty@for-cast.ca

Last synced: 8 months ago

Dependencies

DESCRIPTION cran

R >= 4.0 depends
CircStats >= 0.2 imports
Rcpp >= 0.12.12 imports
Require * imports
backports * imports
checkmate >= 1.8.2 imports
data.table >= 1.10.4 imports
fastmatch >= 1.1 imports
fpCompare >= 0.2.1 imports
magrittr * imports
methods * imports
parallel * imports
quickPlot * imports
raster >= 2.5 imports
rgeos * imports
sp >= 1.2 imports
stats * imports
DBI * suggests
DEoptim >= 2.2 suggests
RColorBrewer >= 1.1 suggests
animation * suggests
bit >= 1.1 suggests
covr * suggests
dplyr * suggests
dqrng * suggests
fasterize * suggests
googledrive * suggests
knitr * suggests
mgcv * suggests
purrr * suggests
rmarkdown * suggests
sf * suggests
testthat >= 1.0.2 suggests

.github/workflows/R-CMD-check.yaml actions

actions/checkout v3 composite
actions/upload-artifact main composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/deploy-pkg-website.yaml actions

JamesIves/github-pages-deploy-action 4.1.4 composite
actions/checkout v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/test-coverage.yaml actions

actions/checkout v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite