Data

Tools

Indexes

Applications

Experiments

Open Source Science

trenchripper

Small library for analysis of mother machine data. Built to run on a SLURM cluster, but can be run locally.

https://github.com/paulssonlab/trenchripper

Science Score: 52.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ✓
    Institutional organization owner
    Organization paulssonlab has institutional domain (paulsson.med.harvard.edu)
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (1.6%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Small library for analysis of mother machine data. Built to run on a SLURM cluster, but can be run locally.

Basic Info
  • Host: GitHub
  • Owner: paulssonlab
  • License: mit
  • Language: Python
  • Default Branch: master
  • Size: 17.6 MB
Statistics
  • Stars: 3
  • Watchers: 3
  • Forks: 1
  • Open Issues: 0
  • Releases: 2
Created almost 2 years ago · Last pushed 6 months ago
Metadata Files
Readme License Citation

README.md

placeholder

Owner

  • Name: Paulsson Lab at HMS
  • Login: paulssonlab
  • Kind: organization
  • Location: Boston, MA

Citation (CITATION.cff) 

cff-version: 1.1.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Eaton
  given-names: Daniel
orcid: https://orcid.org/0000-0003-4790-8254
title: "TrenchRipper: A Pipeline for High-throughput Mother Machine Image Analysis"
version: v1.0.0-zenodo
date-released: 2024-12-24

GitHub Events

Total
  • Release event: 2
  • Watch event: 1
  • Push event: 14
  • Pull request event: 2
  • Fork event: 1
  • Create event: 3
Last Year
  • Release event: 2
  • Watch event: 1
  • Push event: 14
  • Pull request event: 2
  • Fork event: 1
  • Create event: 3

Dependencies

environment.yml pypi
  • parse *
  • pulp *
setup.py pypi
  • bokeh *
  • dask *
  • datashader *
  • h5py *
  • ipympl *
  • jupyter-client *
  • jupyter-core *
  • jupyterlab *
  • jupyterlab-server *
  • matplotlib *
  • numpy *
  • pandas *
  • scikit-image *
  • scipy *