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Collaborative Container Modules with Singularity Registry HPC

Collaborative Container Modules with Singularity Registry HPC - Published in JOSS (2021)

https://github.com/singularityhub/singularity-hpc

Science Score: 100.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README and JOSS metadata
  • ✓
    Academic publication links
    Links to: joss.theoj.org, zenodo.org
  • ✓
    Committers with academic emails
    3 of 17 committers (17.6%) from academic institutions
  • ○
    Institutional organization owner
  • ✓
    JOSS paper metadata
    Published in Journal of Open Source Software

Keywords

containers hpc lmod reproducibility singularity

Keywords from Contributors

standardization pde interpretability wavelets plasma correlation
Last synced: 4 months ago · JSON representation ·

Repository

Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.

Basic Info
Statistics
  • Stars: 125
  • Watchers: 6
  • Forks: 27
  • Open Issues: 32
  • Releases: 50
Topics
containers hpc lmod reproducibility singularity
Created almost 5 years ago · Last pushed 7 months ago
Metadata Files
Readme Changelog Contributing Funding License Code of conduct Citation

README.md

Singularity Registry HPC (shpc)

GitHub actions status DOI DOI

https://raw.githubusercontent.com/singularityhub/singularity-hpc/main/docs/assets/img/shpc.png

Singularity HPC is optimized for managing containers in an HPC environment. Currently, this includes module technologies:

And container technologies:

You can use shpc if you are:

  1. a linux administrator wanting to manage containers as modules for your cluster
  2. a cluster user that wants to maintain your own folder of custom modules
  3. a cluster user that simply wants to pull Singularity images as GitHub packages.

A module technology is required in all cases.

📖️ Read the documentation 📖️ ⭐️ Browse the container module collection ⭐️

😁️ Contributors 😁️

We use the all-contributors tool to generate a contributors graphic below.

Vanessasaurus
Vanessasaurus
💻		 Daniel S. Katz
Daniel S. Katz
💻		 Audrey Stott
Audrey Stott
💻		 Alec Scott
Alec Scott
💻		 manbat
manbat
💻		 Marco De La Pierre
Marco De La Pierre
💻		 Alexandre Strube
Alexandre Strube
💻
Xavier Delaruelle
Xavier Delaruelle
💻		 SarahBeecroft
SarahBeecroft
💻		 Matthieu Muffato
Matthieu Muffato
💻		 Georgia Stuart
Georgia Stuart
💻		 Patrick Hüther
Patrick Hüther
💻		 Cristian Di Pietrantonio
Cristian Di Pietrantonio
💻		 amjad
amjad
💻

🎨️ Previous Art 🎨️

There are other tools that you might be interested in!

License

This code is licensed under the MPL 2.0 LICENSE.

Owner

  • Name: Container Tools
  • Login: singularityhub
  • Kind: organization

open source container hosting registry, tools, and clients

JOSS Publication

Collaborative Container Modules with Singularity Registry HPC
Published
July 20, 2021
DOI
Volume 6, Issue 63, Page 3311
Authors
Vanessa Sochat ORCID
Lawrence Livermore National Lab, Livermore, CA, USA
Alec Scott ORCID
University of Arizona Research Computing, Tuscon, AZ, USA
Editor
Patrick Diehl ORCID
Tags
containers singularity linux registry
View PDF Review Thread Software Archive

Citation (CITATION.cff) 

cff-version: 1.1.0
message: "If you use this software, please cite it as below."
authors:
  - family-names: Sochat
    given-names: Vanessa
    orcid: https://orcid.org/0000-0002-4387-3819
  - family-names: Scott
    given-names: Alec
    orcid: https://orcid.org/0000-0001-6255-1308
title: "Collaborative Container Modules with Singularity Registry HPC"
version: 0.0.31
doi: 10.21105/joss.03311
date-released: 2021-07-20

GitHub Events

Total
  • Create event: 9
  • Release event: 4
  • Issues event: 6
  • Watch event: 10
  • Delete event: 7
  • Issue comment event: 58
  • Push event: 16
  • Pull request event: 19
  • Pull request review event: 23
  • Pull request review comment event: 19
  • Fork event: 3
Last Year
  • Create event: 9
  • Release event: 4
  • Issues event: 6
  • Watch event: 10
  • Delete event: 7
  • Issue comment event: 58
  • Push event: 16
  • Pull request event: 19
  • Pull request review event: 23
  • Pull request review comment event: 19
  • Fork event: 3

Committers

Last synced: 5 months ago

All Time
  • Total Commits: 486
  • Total Committers: 17
  • Avg Commits per committer: 28.588
  • Development Distribution Score (DDS): 0.358
Past Year
  • Commits: 9
  • Committers: 5
  • Avg Commits per committer: 1.8
  • Development Distribution Score (DDS): 0.556
Top Committers
Name Email Commits
vsoch v****h 312
manbat 4****t 44
github-actions[bot] 4****] 42
Marco De La Pierre m****e@g****m 17
Xavier Delaruelle x****e@c****r 15
Matthieu Muffato m****9@s****k 14
github-actions g****s 13
Alec Scott a****c@b****h 10
Georgia Stuart g****t 4
Daniel S. Katz d****z@i****g 4
Alexandre Strube s****k@s****r 4
Audrey Stott 4****t 2
krsg512 k****2@u****t 1
Cristian Di Pietrantonio c****o@g****m 1
Patrick Hüther p****r@g****m 1
SarahBeecroft s****t@u****u 1
amjad A****c 1
Committer Domains (Top 20 + Academic)
uwa.edu.au: 1 usplscpn005.scp.astrazeneca.net: 1 surak.eti.br: 1 ieee.org: 1 bcs.sh: 1 sanger.ac.uk: 1 cea.fr: 1

Issues and Pull Requests

Last synced: 4 months ago

All Time
  • Total issues: 53
  • Total pull requests: 102
  • Average time to close issues: 2 months
  • Average time to close pull requests: about 1 month
  • Total issue authors: 17
  • Total pull request authors: 14
  • Average comments per issue: 7.38
  • Average comments per pull request: 3.45
  • Merged pull requests: 66
  • Bot issues: 0
  • Bot pull requests: 23
Past Year
  • Issues: 6
  • Pull requests: 24
  • Average time to close issues: N/A
  • Average time to close pull requests: 7 days
  • Issue authors: 6
  • Pull request authors: 6
  • Average comments per issue: 0.5
  • Average comments per pull request: 1.38
  • Merged pull requests: 13
  • Bot issues: 0
  • Bot pull requests: 8
View more stats
Top Authors
Issue Authors
  • muffato (9)
  • surak (9)
  • shahzebsiddiqui (8)
  • vsoch (6)
  • georgiastuart (5)
  • audreystott (2)
  • Amjadhpc (2)
  • jiaqiwang969 (2)
  • theklaloizou (2)
  • visakhraja (1)
  • mdehollander (1)
  • mtwest2718 (1)
  • evalanguaria (1)
  • SomePersonSomeWhereInTheWorld (1)
  • dipietrantonio (1)
Pull Request Authors
  • vsoch (45)
  • github-actions[bot] (23)
  • muffato (15)
  • marcodelapierre (4)
  • Ausbeth (4)
  • georgiastuart (2)
  • xdelaruelle (2)
  • audreystott (1)
  • Amjadhpc (1)
  • surak (1)
  • dipietrantonio (1)
  • yarikoptic (1)
  • theklaloizou (1)
  • phue (1)
Top Labels
Issue Labels
enhancement (1) good first issue (1)
Pull Request Labels
container-recipe (1) hacktoberfest-accepted (1) wontfix (1)

Packages

  • Total packages: 2
  • Total downloads:
    • pypi 273 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 3
    (may contain duplicates)
  • Total versions: 72
  • Total maintainers: 3
pypi.org: singularity-hpc

Local registry intended for HPC using containers and system modules.

  • Versions: 70
  • Dependent Packages: 0
  • Dependent Repositories: 3
  • Downloads: 273 Last month
Rankings
Stargazers count: 7.4%
Forks count: 8.0%
Dependent repos count: 9.0%
Average: 9.3%
Dependent packages count: 10.0%
Downloads: 11.9%
Maintainers (1)
vsochat
Last synced: 4 months ago
spack.io: singularity-hpc

Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.

  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 0.0%
Stargazers count: 19.8%
Forks count: 22.4%
Average: 24.9%
Dependent packages count: 57.3%
Maintainers (2)
vsoch marcodelapierre
Last synced: 4 months ago

Dependencies

.github/workflows/alert-action-updates.yaml actions
  • actions/checkout v3 composite
  • vsoch/action-updater 2c2216e27ee963aaa31ff0ff81de007acb84b9c2 composite
.github/workflows/docs.yml actions
  • JamesIves/github-pages-deploy-action ba1486788b0490a235422264426c45848eac35c6 composite
  • actions/checkout v3 composite
.github/workflows/main.yml actions
  • actions/checkout v3 composite
  • crate-ci/typos 7ad296c72fa8265059cc03d1eda562fbdfcd6df2 composite
.github/workflows/release.yaml actions
  • actions/checkout v3 composite
.github/workflows/test-container.yml actions
  • actions/checkout v3 composite
  • eWaterCycle/setup-singularity v7 composite
  • jitterbit/get-changed-files v1 composite
.github/workflows/test-core.yml actions
  • actions/checkout v3 composite
  • singularityhub/install-singularity main composite
.github/workflows/test.yml actions
  • actions/checkout v3 composite
  • eWaterCycle/setup-singularity v7 composite
.github/workflows/update-contributors.yaml actions
  • actions/checkout v3 composite
  • con/tributors master composite
  • vsoch/pull-request-action d703f40f3af5ae294f9816395ddf2e3d2d3feafa composite
actions/cache-update/action.yaml actions
  • singularityhub/container-executable-discovery/install main composite
  • vsoch/pull-request-action 50f22f6d146226ee6b73b7a001f26a3d4579f360 composite
Dockerfile docker
  • centos centos7 build
.github/dev-requirements.txt pypi
  • black ==23.3.0 development
  • flake8 * development
  • isort * development
  • pre-commit * development
docs/requirements.txt pypi
  • Jinja2 <3.1
  • appdirs *
  • configargparse *
  • docutils ==0.12
  • recommonmark *
  • singularity-hpc *
  • sphinx *
  • sphinx-argparse *
  • sphinx_rtd_theme *
  • sphinxcontrib-napoleon *
pyproject.toml pypi
setup.py pypi