https://github.com/common-workflow-language/cwl-upgrader

Upgrade CWL syntax to a newer version

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic publication links
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Committers with academic emails
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (5.7%) to scientific vocabulary

Keywords

commonwl cwl

Keywords from Contributors

common-workflow-language workflows cwl-workflows workflow-engine phase-transition unit-test climate climate-data climate-modeling interaction

Last synced: 5 months ago · JSON representation

Repository

Upgrade CWL syntax to a newer version

Basic Info

Host: GitHub
Owner: common-workflow-language
License: apache-2.0
Language: Python
Default Branch: main
Homepage: http://www.commonwl.org
Size: 242 KB

Statistics

Stars: 5
Watchers: 33
Forks: 3
Open Issues: 11
Releases: 18

Topics

commonwl cwl

Created over 9 years ago · Last pushed 5 months ago

Metadata Files

Readme License

README.rst

=====================================================
Common workflow language standalone document upgrader
=====================================================

This is a standalone upgrader for Common Workflow Language documents from
version ``draft-3``, ``v1.0``, and ``v1.1`` to ``v1.2``.

See https://github.com/sbg/sevenbridges-cwl-draft2-upgrader for upgrading from ``sbg:draft-2``.

It does not check for correctness of the input document, for that one can use
`the CWL reference implementation `_ (``cwltool --validate``).

This is written and tested for Python 3.8, 3.9, 3.10, 3.11, and 3.12.

Install
-------

Installing the official package from PyPI::

  pip install cwl-upgrader

Or from source::

  git clone https://github.com/common-workflow-language/cwl-upgrader.git
  pip install ./cwl-upgrader/

Run on the command line
-----------------------

::

  cwl-upgrader path-to-cwl-document [another-path-to-cwl-document ...]

Owner

Name: Common Workflow Language
Login: common-workflow-language
Kind: organization

Website: https://www.commonwl.org
Twitter: commonwl
Repositories: 34
Profile: https://github.com/common-workflow-language

GitHub Events

Total

Release event: 1
Delete event: 10
Issue comment event: 13
Push event: 16
Pull request review event: 1
Pull request event: 18
Create event: 11

Last Year

Release event: 1
Delete event: 10
Issue comment event: 13
Push event: 16
Pull request review event: 1
Pull request event: 18
Create event: 11

Committers

Last synced: almost 3 years ago

All Time

Total Commits: 131
Total Committers: 8
Avg Commits per committer: 16.375
Development Distribution Score (DDS): 0.473

Past Year

Commits: 13
Committers: 2
Avg Commits per committer: 6.5
Development Distribution Score (DDS): 0.462

Top Committers

Name	Email	Commits
Michael R. Crusoe	m**e@g**m	69
dependabot[bot]	4**]@u**m	28
dependabot-preview[bot]	2**]@u**m	17
Michael R. Crusoe	1**c@u**m	6
Tomoya Tanjo	t**o@g**m	5
Michael R. Crusoe	m**c@u**m	4
Alain Domissy	a**y@g**m	1
Peter Amstutz	p**z@c**m	1

Committer Domains (Top 20 + Academic)

curii.com: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 16
Total pull requests: 148
Average time to close issues: over 1 year
Average time to close pull requests: 6 days
Total issue authors: 9
Total pull request authors: 5
Average comments per issue: 2.19
Average comments per pull request: 1.08
Merged pull requests: 125
Bot issues: 1
Bot pull requests: 107

Past Year

Issues: 0
Pull requests: 20
Average time to close issues: N/A
Average time to close pull requests: 3 days
Issue authors: 0
Pull request authors: 2
Average comments per issue: 0
Average comments per pull request: 0.95
Merged pull requests: 14
Bot issues: 0
Bot pull requests: 18

View more stats

Top Authors

Issue Authors

mr-c (4)
jorvis (2)
golharam (2)
BJWiley233 (2)
tom-tan (2)
YuxinShi0423 (1)
bkappes (1)
dependabot-preview[bot] (1)
tetron (1)

Pull Request Authors

dependabot[bot] (95)
mr-c (34)
dependabot-preview[bot] (12)
tom-tan (6)
tetron (1)

Top Labels

Issue Labels

Pull Request Labels

dependencies (107) python (50) github_actions (11) BioHackEU21 (3)

Packages

Total packages: 3
Total downloads:
- pypi 70,913 last-month
Total docker downloads: 93,065

Total dependent packages: 4
(may contain duplicates)
Total dependent repositories: 24
(may contain duplicates)
Total versions: 28
Total maintainers: 3

pypi.org: cwl-upgrader

Upgrade a CWL tool or workflow document from one version to another

Homepage: https://www.commonwl.org
Documentation: https://cwl-upgrader.readthedocs.io/
License: Apache 2.0
Latest release: 1.2.12
published about 1 year ago

Versions: 26
Dependent Packages: 2
Dependent Repositories: 24
Downloads: 70,913 Last month
Docker Downloads: 93,065

Rankings

Docker downloads count: 1.1%

Downloads: 1.3%

Dependent repos count: 3.0%

Dependent packages count: 3.2%

Average: 7.8%

Forks count: 16.9%

Stargazers count: 21.6%

Maintainers (2)

mvdbeek mcrusoe

Last synced: 6 months ago

spack.io: py-cwl-upgrader

Common Workflow Language standalone document upgrader

Homepage: https://github.com/common-workflow-language/cwl-upgrader
License: []
Latest release: 1.2.4
published about 3 years ago

Versions: 1
Dependent Packages: 1
Dependent Repositories: 0

Rankings

Dependent repos count: 0.0%

Average: 22.0%

Dependent packages count: 28.1%

Stargazers count: 29.8%

Forks count: 30.1%

Maintainers (1)

adamjstewart

Last synced: 6 months ago

conda-forge.org: cwl-upgrader

Homepage: https://github.com/common-workflow-language/cwl-upgrader
License: Apache-2.0
Latest release: 1.2.3
published over 3 years ago

Versions: 1
Dependent Packages: 1
Dependent Repositories: 0

Rankings

Dependent packages count: 28.8%

Dependent repos count: 34.0%

Average: 43.2%

Forks count: 54.2%

Stargazers count: 55.7%

Last synced: 6 months ago

Dependencies

mypy-requirements.txt pypi

mypy ==0.971
types-setuptools *

requirements.txt pypi

ruamel.yaml >=0.16.0,<0.17.22
ruamel.yaml >=0.15.98,<0.17.22
ruamel.yaml >=0.15.78,<0.17.22
ruamel.yaml >=0.15.71,<0.17.22
schema-salad *

setup.py pypi

ruamel.yaml *
schema_salad *
setuptools *

test-requirements.txt pypi

pytest <7.2.0 test
pytest-cov * test
pytest-runner * test
pytest-xdist * test

.github/workflows/ci-tests.yml actions

actions/cache v3 composite
actions/checkout v3 composite
actions/setup-python v4 composite
codecov/codecov-action v3 composite
pypa/gh-action-pypi-publish release/v1 composite

.github/workflows/codeql-analysis.yml actions

actions/checkout v2 composite
github/codeql-action/analyze v2 composite
github/codeql-action/init v2 composite