augmentedRCBD

Analysis of Augmented Randomised Complete Block Design

https://github.com/aravind-j/augmentedrcbd

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 5 DOI reference(s) in README
✓
Academic publication links
Links to: zenodo.org
○
Committers with academic emails
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (11.2%) to scientific vocabulary

Keywords

augmented-block augmented-design augmented-rcbd r

Keywords from Contributors

curve-fitting germination germination-indices seed seed-germination-curve seed-germination-indices

Last synced: 6 months ago · JSON representation ·

Repository

Analysis of Augmented Randomised Complete Block Design

Basic Info

Host: GitHub
Owner: aravind-j
Language: R
Default Branch: master
Homepage: https://aravind-j.github.io/augmentedRCBD
Size: 19.1 MB

Statistics

Stars: 7
Watchers: 2
Forks: 4
Open Issues: 3
Releases: 8

Topics

augmented-block augmented-design augmented-rcbd r

Created over 9 years ago · Last pushed 7 months ago

Metadata Files

Readme Changelog Citation Codemeta

README.Rmd

---
output: rmarkdown::github_document
always_allow_html: true
---

```{r, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "",
  fig.path = "inst/extdata/"
)
```



## `augmentedRCBD`: Analysis of Augmented Randomised Complete Block Designs 

```{r,echo = FALSE, message = FALSE}
devtools::load_all(".")

```

###### Version : [`r getNamespaceVersion("augmentedRCBD")`](https://aravind-j.github.io/augmentedRCBD/articles/Data_Analysis_with_augmentedRCBD.html#install); Copyright (C) 2015-`r  format(Sys.Date(), "%Y")`: [ICAR-NBPGR](http://www.nbpgr.ernet.in/); License: [GPL-2|GPL-3](https://www.r-project.org/Licenses/)

##### *Aravind, J.^1^, Mukesh Sankar, S.^2^, Wankhede, D. P.^3^, and Kaur, V.^4^*

1. Division of Germplasm Conservation, ICAR-National Bureau of Plant Genetic Resources, New Delhi.
2. Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi.
3. Division of Genomic Resources, ICAR-National Bureau of Plant Genetic Resources, New Delhi.
4. Division of Germplasm Evaluation, ICAR-National Bureau of Plant Genetic Resources, New Delhi.

***

[![minimal R version](https://img.shields.io/badge/R>%3D-3.0.2-6666ff.svg?logo=R)](https://cran.r-project.org/)
[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version-last-release/augmentedRCBD)](https://cran.r-project.org/package=augmentedRCBD)
[![Dependencies](https://tinyverse.netlify.app/status/augmentedRCBD)](https://cran.r-project.org/package=augmentedRCBD)
[![rstudio mirror downloads](https://cranlogs.r-pkg.org/badges/grand-total/augmentedRCBD?color=green)](https://CRAN.R-project.org/package=augmentedRCBD)
```{r, results='asis', echo=FALSE}
dver <- ifelse(test = gsub("(.\\.)(\\d+)(\\..)", "", getNamespaceVersion("augmentedRCBD")) != "",
               yes = getNamespaceVersion("augmentedRCBD"),
               no = gsub("Version:\\s*", "", readLines(paste0("https://raw.githubusercontent.com/", "aravind-j/augmentedRCBD", "/master/DESCRIPTION"))[grep("Version:", readLines(paste0("https://raw.githubusercontent.com/", "aravind-j/augmentedRCBD", "/master/DESCRIPTION")))]))

cat(paste("[![develVersion](https://img.shields.io/badge/devel%20version-", dver, "-orange.svg)](https://github.com/aravind-j/augmentedRCBD)", sep = ""))
```
[![Github Code Size](https://img.shields.io/github/languages/code-size/aravind-j/augmentedRCBD.svg)](https://github.com/aravind-j/augmentedRCBD)
[![R-CMD-check](https://github.com/aravind-j/augmentedRCBD/workflows/R-CMD-check/badge.svg)](https://github.com/aravind-j/augmentedRCBD/actions)
[![Project Status: WIP](https://www.repostatus.org/badges/latest/inactive.svg)](https://www.repostatus.org/#inactive)
[![lifecycle](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
[![Last-changedate](https://img.shields.io/badge/last%20change-`r gsub('-', '--', Sys.Date())`-yellowgreen.svg)](https://github.com/aravind-j/augmentedRCBD)
[![Zenodo DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.1310011.svg)](https://doi.org/10.5281/zenodo.1310011)
[![Website - pkgdown](https://img.shields.io/website-up-down-green-red/https/aravind-j.github.io/augmentedRCBD.svg)](https://aravind-j.github.io/augmentedRCBD/)
[![.](https://pro-pulsar-193905.appspot.com/UA-116716530-1/welcome-page)](https://github.com/aravind-j/google-analytics-beacon)




***

## Description
`r gsub("()", "[doi:\\2](https://doi.org/\\2)", gsub("\\n", " ", packageDescription("augmentedRCBD", fields = "Description")))`

## Installation
The package can be installed from CRAN as follows:

```{r, eval=FALSE}
# Install from CRAN
install.packages('augmentedRCBD', dependencies=TRUE)
```

The development version can be installed from github as follows:

```{r, eval=FALSE}
# Install development version from Github
if (!require('devtools')) install.packages('devtools')
devtools::install_github("aravind-j/augmentedRCBD")
```

## Detailed tutorial
For a detailed tutorial (vignette) on how to used this package type:

```{r, eval=FALSE}
browseVignettes(package = 'augmentedRCBD')
```
The vignette for the latest version is also available [online](https://aravind-j.github.io/augmentedRCBD/articles/Data_Analysis_with_augmentedRCBD.html).

## What's new
To know whats new in this version type:

```{r, eval=FALSE}
news(package='augmentedRCBD')
```

## Links

[CRAN page](https://cran.r-project.org/package=augmentedRCBD)

[Github page](https://github.com/aravind-j/augmentedRCBD)

[Documentation website](https://aravind-j.github.io/augmentedRCBD/)

[Zenodo DOI](https://doi.org/10.5281/zenodo.1310011)

## CRAN checks

```{r, echo = FALSE}
pkgname <- "augmentedRCBD"

osdf <-
  rbind(data.frame(OS = "Linux", 
                   Flavour = c("r-devel-linux-x86_64-debian-clang",
                               "r-devel-linux-x86_64-debian-gcc", 
                               "r-devel-linux-x86_64-fedora-clang",
                               "r-devel-linux-x86_64-fedora-gcc", 
                               "r-patched-linux-x86_64",
                               "r-release-linux-x86_64")),
        # data.frame(OS = "Solaris", 
        #            Flavour = c("r-patched-solaris-x86")),
        data.frame(OS = "Windows", 
                   Flavour = c("r-devel-windows-x86_64", 
                               "r-release-windows-x86_64",
                               "r-oldrel-windows-x86_64")),
        data.frame(OS = "macOS", 
                   Flavour = c("r-release-macos-x86_64", 
                               # "r-release-macos-arm64",
                               # "r-oldrel-macos-arm64",
                               "r-oldrel-macos-x86_64")))

chkurl <- paste("https://cran.r-project.org/web/checks/check_results_",
                pkgname, ".html", sep = "")
library(RCurl)

if (url.exists(chkurl)) {
  chklink <- paste("(", chkurl,  ")", sep = "")
} else {
  chklink <- "(https://cran.r-project.org/web/checks/check_results_j.aravind_at_icar.gov.in.html)"
}

osdf$`CRAN check` <- paste("[![CRAN check - ", osdf$Flavour, "]",
                           "(https://badges.cranchecks.info/flavor/",
                           osdf$Flavour, "/", pkgname, ".svg)]",
                           chklink,
                           sep = "")
```


```{r, echo = FALSE, results='asis'}
cat("\n",
    "[![Linux](https://img.shields.io/badge/Linux-FCC624?style=for-the-badge&logo=linux&logoColor=black)](https://cran.r-project.org/web/checks/check_results_augmentedRCBD.html)", "\n")

# knitr::kable(osdf[osdf$OS == "Linux", c(2, 3)], format = "simple", 
#              col.names = c("", ""), 
#              row.names = FALSE)

pander::pandoc.table(osdf[osdf$OS == "Linux", c(2, 3)], split.tables = Inf,
                     row.names = FALSE, justify = "ll", style = "grid")

cat("\n",
    "[![Windows](https://img.shields.io/badge/Windows-0078D6?style=for-the-badge&logo=windows&logoColor=white)](https://cran.r-project.org/web/checks/check_results_augmentedRCBD.html)", "\n")

# knitr::kable(osdf[osdf$OS == "Windows", c(2, 3)], format = "simple",
#              col.names = c("", ""),
#              row.names = FALSE)

pander::pandoc.table(osdf[osdf$OS == "Windows", c(2, 3)], split.tables = Inf,
                     row.names = FALSE, justify = "ll", style = "grid")

cat("\n",
    "[![MacOS](https://img.shields.io/badge/mac%20os-000000?style=for-the-badge&logo=apple&logoColor=white)](https://cran.r-project.org/web/checks/check_results_augmentedRCBD.html)", "\n")

# knitr::kable(osdf[osdf$OS == "macOS", c(2, 3)], format = "simple",
#              col.names = c("", ""),
#              row.names = FALSE)

pander::pandoc.table(osdf[osdf$OS == "macOS", c(2, 3)], split.tables = Inf,
                     row.names = FALSE, justify = "ll", style = "grid")

cat("\n")
```

## Citing `augmentedRCBD`
To cite the methods in the package use:

```{r, eval = FALSE}
citation("augmentedRCBD")
```

```{r, echo = FALSE}
detach("package:augmentedRCBD", unload=TRUE)
suppressPackageStartupMessages(library(augmentedRCBD))
cit <- citation("augmentedRCBD")
# yr <- format(Sys.Date(), "%Y")
# cit[1]$year <- yr
# oc <- class(cit)
# 
# cit <- unclass(cit)
# attr(cit[[1]],"textVersion") <- gsub("\\(\\)",
#                                      paste("\\(", yr, "\\)", sep = ""),
#                                      attr(cit[[1]],"textVersion"))
# class(cit) <- oc
cit
```

Owner

Name: J. Aravind
Login: aravind-j
Kind: user
Location: New Delhi, India

Website: https://aravind-j.github.io/R-packages-gallery/
Repositories: 11
Profile: https://github.com/aravind-j

Scientist, Division of Germplasm Conservation, ICAR-National Bureau of Plant Genetic Resources

Citation (CITATION.cff)

# -----------------------------------------------------------
# CITATION file created with {cffr} R package, v0.5.0
# See also: https://docs.ropensci.org/cffr/
# -----------------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "augmentedRCBD" in publications use:'
type: software
license:
- GPL-2.0-only
- GPL-3.0-only
title: 'augmentedRCBD: Analysis of Augmented Randomised Complete Block Designs'
version: 0.1.7
abstract: Functions for analysis of data generated from experiments in augmented randomised
  complete block design according to Federer, W.T. (1961) <doi:10.2307/2527837>. Computes
  analysis of variance, adjusted means, descriptive statistics, genetic variability
  statistics etc. Further includes data visualization and report generation functions.
authors:
- family-names: Aravind
  given-names: J.
  email: j.aravind@icar.gov.in
  orcid: https://orcid.org/0000-0002-4791-442X
- family-names: Mukesh Sankar
  given-names: S.
  email: mukeshsankar@gmail.com
  orcid: https://orcid.org/0000-0001-5459-392X
- family-names: Wankhede
  given-names: Dhammaprakash Pandhari
  email: d.wankhede@icar.gov.in
  orcid: https://orcid.org/0000-0001-6384-8664
- family-names: Kaur
  given-names: Vikender
  email: vikender.kaur@icar.gov.in
  orcid: https://orcid.org/0000-0001-9698-7329
preferred-citation:
  type: manual
  title: 'augmentedRCBD: Analysis of Augmented Randomised Complete Block Designs'
  authors:
  - family-names: Aravind
    given-names: J.
    email: aravindj@nbpgr.ernet.in
    orcid: https://orcid.org/0000-0002-4791-442X
  - family-names: Mukesh Sankar
    given-names: S.
    email: mukeshsankar@gmail.com
    orcid: https://orcid.org/0000-0001-5459-392X
  - family-names: Wankhede
    given-names: Dhammaprakash Pandhari
    email: d.wankhede@icar.gov.in
    orcid: https://orcid.org/0000-0001-6384-8664
  - family-names: Kaur
    given-names: Vikender
    email: vikender.kaur@icar.gov.in
    orcid: https://orcid.org/0000-0001-9698-7329
  notes: R package version 0.1.7 https://aravind-j.github.io/augmentedRCBD/ https://cran.r-project.org/package=augmentedRCBD
repository: https://CRAN.R-project.org/package=augmentedRCBD
repository-code: https://github.com/aravind-j/augmentedRCBD
url: https://CRAN.R-project.org/package=augmentedRCBD
contact:
- family-names: Aravind
  given-names: J.
  email: j.aravind@icar.gov.in
  orcid: https://orcid.org/0000-0002-4791-442X
keywords:
- augmented-block
- augmented-design
- augmented-rcbd
- r
identifiers:
- type: url
  value: https://aravind-j.github.io/augmentedRCBD/
- type: url
  value: https://doi.org/10.5281/zenodo.1310011

CodeMeta (codemeta.json)

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GitHub Events

Total

Issues event: 1
Watch event: 1
Push event: 6

Last Year

Issues event: 1
Watch event: 1
Push event: 6

Committers

Last synced: over 1 year ago

All Time

Total Commits: 272
Total Committers: 3
Avg Commits per committer: 90.667
Development Distribution Score (DDS): 0.059

Past Year

Commits: 7
Committers: 1
Avg Commits per committer: 7.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
J. Aravind	a**i@g**m	256
J. Aravind	a**6@y**m	14
GitHub Actions	a**s@g**m	2

Committer Domains (Top 20 + Academic)

github.com: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 16
Total pull requests: 0
Average time to close issues: 2 months
Average time to close pull requests: N/A
Total issue authors: 13
Total pull request authors: 0
Average comments per issue: 2.0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 1
Pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 1
Pull request authors: 0
Average comments per issue: 0.0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

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Top Authors

Issue Authors

aravind-j (2)
ramendra-sarma (2)
JamesJesusjames (2)
myaseen208 (1)
rvlenth (1)
Rajithanair-2301 (1)
shanmugavadivelps (1)
Guruprasad-A (1)
PrasadMaruthi (1)
GeneticistHere (1)
deanmuungani (1)
sckott (1)
thomasp85 (1)

Pull Request Authors

Top Labels

Issue Labels

needreprex (4)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- cran 1,427 last-month

Total dependent packages: 0
Total dependent repositories: 0
Total versions: 8
Total maintainers: 1

cran.r-project.org: augmentedRCBD

Analysis of Augmented Randomised Complete Block Designs

Homepage: https://github.com/aravind-j/augmentedRCBD https://CRAN.R-project.org/package=augmentedRCBD https://aravind-j.github.io/augmentedRCBD/ https://doi.org/10.5281/zenodo.1310011
Documentation: http://cran.r-project.org/web/packages/augmentedRCBD/augmentedRCBD.pdf
License: GPL-2 | GPL-3
Latest release: 0.1.7
published over 2 years ago

Versions: 8
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 1,427 Last month

Rankings

Forks count: 12.8%

Downloads: 17.3%

Stargazers count: 22.5%

Average: 23.6%

Dependent packages count: 29.8%

Dependent repos count: 35.5%

Maintainers (1)

j.aravind@icar.gov.in

Last synced: 7 months ago

Dependencies

DESCRIPTION cran

R >= 3.0.1 depends
Rdpack * imports
dplyr * imports
emmeans * imports
flextable * imports
ggplot2 * imports
grDevices * imports
mathjaxr * imports
methods * imports
moments * imports
multcomp * imports
multcompView * imports
officer * imports
reshape2 * imports
stats * imports
stringi * imports
utils * imports
RCurl * suggests
XML * suggests
agricolae * suggests
diagram * suggests
httr * suggests
knitr * suggests
pander * suggests
rmarkdown * suggests
testthat * suggests

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